Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq3947 89.7 5e-13 >seq3947 Length=2916 Score = 89.7 bits (98), Expect = 5e-13 Identities = 191/282 (68%), Gaps = 10/282 (4%) Strand=Plus/Plus Query 34607 CAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATG 34666 || || || ||||| ||||| ||| || ||||| | || ||| |||| | || ||| Sbjct 1335 CAGTTTTATGTCGCAAATGGCGAGTTGAGTTGCCAATTATACCAAAGATCAGCTGATATG 1394 Query 34667 GGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCAT 34726 || | || || || || || || || |||||||| | ||||||||||| |||||| Sbjct 1395 GGTCTCGGAGTTCCTTTTAATATCGCATCATACGCTCTATTGACGTACATGATTGCTCAT 1454 Query 34727 GTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTG 34786 || || ||||| || | || ||||| || || ||||| ||||| ||| | Sbjct 1455 GTTACAAATTTAAAGCCTGGCGATTTTGTTCATACTTTTGGTGATGCTCATATTTACACG 1514 Query 34787 AACCACATCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTC 34846 || ||||| |||| ||| || || |||| | || || || ||||| ||||| Sbjct 1515 AATCACATTGAGCCTCTCAAAGAGCAACTCGAACGCAACCCTCGTCCATTCCCACAGCTA 1574 Query 34847 AAAATTATTCGAGCCGTCA----CCTCA-ATCGATGACTTTA 34883 |||| || || ||||| ||| | ||||||||||||| Sbjct 1575 AAAA----TCAAG-CGTCAAGTTCCTAATATCGATGACTTTA 1611 Score = 89.7 bits (98), Expect = 5e-13 Identities = 191/282 (68%), Gaps = 10/282 (4%) Strand=Plus/Minus Query 6462 TAAAGTCATCGAT-TGAGG----TGACGGCTCGAATAATTTTGAGCTGGGGGAACGGTCG 6516 ||||||||||||| | ||| ||||| || || |||| ||||| ||||| || || Sbjct 1611 TAAAGTCATCGATATTAGGAACTTGACG-CTTGA----TTTTTAGCTGTGGGAATGGACG 1557 Query 6517 GGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAGATATGCGCATC 6576 || | |||| || || ||| |||| ||||| ||| ||| ||||| ||||| Sbjct 1556 AGGGTTGCGTTCGAGTTGCTCTTTGAGAGGCTCAATGTGATTCGTGTAAATATGAGCATC 1497 Query 6577 CCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGCGATCATGTACGT 6636 || || ||||| || | || ||||| || |||||||| ||||||||||| Sbjct 1496 ACCAAAAGTATGAACAAAATCGCCAGGCTTTAAATTTGTAACATGAGCAATCATGTACGT 1437 Query 6637 GAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCGTTG 6696 | |||||||| || || || || || || || | ||||| || | |||| ||| Sbjct 1436 CAATAGAGCGTATGATGCGATATTAAAAGGAACTCCGAGACCCATATCAGCTGATCTTTG 1377 Query 6697 ATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTG 6738 || | ||||| || ||| ||||| ||||| || || || Sbjct 1376 GTATAATTGGCAACTCAACTCGCCATTTGCGACATAAAACTG 1335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448096111459440