Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq3947 176 4e-39
>seq3947
Length=2916
Score = 176 bits (194), Expect = 4e-39
Identities = 500/751 (67%), Gaps = 32/751 (4%)
Strand=Plus/Minus
Query 118375 AAATCTTCAAACTTAAAGTCTTCTATATTT-----TTGATATCCTTGTTTATGGATAG-T 118428
|||||||||||||||||||| || ||||| |||| |||| || | ||| |
Sbjct 1624 AAATCTTCAAACTTAAAGTCATCGATATTAGGAACTTGACG--CTTGATTTT---TAGCT 1570
Query 118429 GTGGGAAACGGGAGAGGCTCCCTTGTGAGTTGGAGTTTCAGTGGCTCAATGTGATTCATA 118488
||||||| || |||| | | | |||||| ||| || ||||||||||||||| |
Sbjct 1569 GTGGGAAT-GGACGAGGGTTGCGTTCGAGTTGCTCTTTGAGAGGCTCAATGTGATTCGTG 1511
Query 118489 TAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGGTGA 118548
|| | ||||||||| |||| ||||| | || || ||||| | | ||| | |||
Sbjct 1510 TAAATATGAGCATCACCAAAAGTATGAACAAAATCGCCAGGCTTTAAATTTGTAACATGA 1451
Query 118549 GCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCCATG 118608
||||||||||| ||||| | | ||| || | |||||||||||| || ||||||||
Sbjct 1450 GCAATCATGTACGTCAATAGAGCGTATGATGCGATATTAAAAGGAACTCCGAGACCCATA 1391
Query 118609 TCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTGACTT 118668
|| |||||||| ||||| ||||||||| | ||| || ||||| |||||||||||
Sbjct 1390 TCAGCTGATCTTTGGTATAATTGGCAACTCAACTCGCCATTTGCGACATAAAACTGTACC 1331
Query 118669 ATGATGTGACATGGAGGCAGAACCA----TGGAACTCAGTTGGGCAGGATTCCAGGCTGT 118724
| |||||||| || || ||| |||| | | | ||||||||||| |
Sbjct 1330 AGACAATGACATGGTGGAAGTGCCATTTGTGGA----ATATCCACTGGATTCCAGGCACT 1275
Query 118725 TAAAACATGCCTTCTGCTATATGGTTCTACCTGT-ATACCCTCAATTAAAT-TCTGAATC 118782
||||| | | || || ||| | || | | || | ||||| | || | | |||
Sbjct 1274 TAAAATAATTCGTCGATCATTTGGAT-TAGATTTAATGCGTTCAATAACATCTTTTAAT- 1217
Query 118783 TGATCCACACCCTTTCCAGTATACTGAGACTCGCATCCTTTATATTCTGCCCCAAAAAAT 118842
||||| | || | | ||| | | |||||| ||||||| || ||||||
Sbjct 1216 TGATCAATTCCTTGTTTGTCATATTCATGATCGCATGTCTTATATTGGGCACCAAAATGA 1157
Query 118843 CTCCATTGAAAACCATAAACAGGCCCCAGATCTCC--CTGGGACCTAAAATCTAAACCTA 118900
| ||||||||| |||||||| || |||| ||| || || | || || |||||
Sbjct 1156 CGCCATTGAAATCCATAAACTGGACCCAAATCACCCACTTGACGCT--CATTAAAACCGG 1099
Query 118901 CTTTTCTCTGAAATTCTTTTGACCCATTAGCATTCCAAA-TAGCAACTCCtttttttGCC 118959
| | ||||| | | || | | ||||| | | | | ||| |||
Sbjct 1098 ATGCATCGAGGAATTCACGCGTACTGTTTCCGTCCCAAATTCGTATATTCTTCGCTTG-A 1040
Query 118960 AGATCATTAGAGTTTGTAGAACCACTTAAAAACCAAAGAAGCTCCTCAACAACGCCTCTC 119019
|| |||| | ||| ||||| ||| ||||| | |||||||||| | || |||| |
Sbjct 1039 AGCAATTTAGCATCTGTGGAACCTTTTATGAACCATAAAAGCTCCTCAGCGACTCCTCGC 980
Query 119020 CAAAAAACTGTTTTTGTTGTAAACAGTGGAAACTGA-CCTCTAAGTGAATATCTTGTTTG 119078
||||| ||| ||| ||||| |||| |||||| ||| || ||| | || | | ||||
Sbjct 979 CAAAATACTCGTTTGGTTGTCAACAATGGAAATTGATCCCGTAAATTAA-AGCGCATTTG 921
Query 119079 TGTTCCAAAAATAGACAGAGTCCCAACACCT 119109
|| ||||| ||| | ||| |||||||||
Sbjct 920 TGCACCAAATATACTGACAGTTCCAACACCT 890
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414326888533828
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |