Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq3947 176 4e-39 >seq3947 Length=2916 Score = 176 bits (194), Expect = 4e-39 Identities = 500/751 (67%), Gaps = 32/751 (4%) Strand=Plus/Minus Query 118375 AAATCTTCAAACTTAAAGTCTTCTATATTT-----TTGATATCCTTGTTTATGGATAG-T 118428 |||||||||||||||||||| || ||||| |||| |||| || | ||| | Sbjct 1624 AAATCTTCAAACTTAAAGTCATCGATATTAGGAACTTGACG--CTTGATTTT---TAGCT 1570 Query 118429 GTGGGAAACGGGAGAGGCTCCCTTGTGAGTTGGAGTTTCAGTGGCTCAATGTGATTCATA 118488 ||||||| || |||| | | | |||||| ||| || ||||||||||||||| | Sbjct 1569 GTGGGAAT-GGACGAGGGTTGCGTTCGAGTTGCTCTTTGAGAGGCTCAATGTGATTCGTG 1511 Query 118489 TAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGGTGA 118548 || | ||||||||| |||| ||||| | || || ||||| | | ||| | ||| Sbjct 1510 TAAATATGAGCATCACCAAAAGTATGAACAAAATCGCCAGGCTTTAAATTTGTAACATGA 1451 Query 118549 GCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCCATG 118608 ||||||||||| ||||| | | ||| || | |||||||||||| || |||||||| Sbjct 1450 GCAATCATGTACGTCAATAGAGCGTATGATGCGATATTAAAAGGAACTCCGAGACCCATA 1391 Query 118609 TCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTGACTT 118668 || |||||||| ||||| ||||||||| | ||| || ||||| ||||||||||| Sbjct 1390 TCAGCTGATCTTTGGTATAATTGGCAACTCAACTCGCCATTTGCGACATAAAACTGTACC 1331 Query 118669 ATGATGTGACATGGAGGCAGAACCA----TGGAACTCAGTTGGGCAGGATTCCAGGCTGT 118724 | |||||||| || || ||| |||| | | | ||||||||||| | Sbjct 1330 AGACAATGACATGGTGGAAGTGCCATTTGTGGA----ATATCCACTGGATTCCAGGCACT 1275 Query 118725 TAAAACATGCCTTCTGCTATATGGTTCTACCTGT-ATACCCTCAATTAAAT-TCTGAATC 118782 ||||| | | || || ||| | || | | || | ||||| | || | | ||| Sbjct 1274 TAAAATAATTCGTCGATCATTTGGAT-TAGATTTAATGCGTTCAATAACATCTTTTAAT- 1217 Query 118783 TGATCCACACCCTTTCCAGTATACTGAGACTCGCATCCTTTATATTCTGCCCCAAAAAAT 118842 ||||| | || | | ||| | | |||||| ||||||| || |||||| Sbjct 1216 TGATCAATTCCTTGTTTGTCATATTCATGATCGCATGTCTTATATTGGGCACCAAAATGA 1157 Query 118843 CTCCATTGAAAACCATAAACAGGCCCCAGATCTCC--CTGGGACCTAAAATCTAAACCTA 118900 | ||||||||| |||||||| || |||| ||| || || | || || ||||| Sbjct 1156 CGCCATTGAAATCCATAAACTGGACCCAAATCACCCACTTGACGCT--CATTAAAACCGG 1099 Query 118901 CTTTTCTCTGAAATTCTTTTGACCCATTAGCATTCCAAA-TAGCAACTCCtttttttGCC 118959 | | ||||| | | || | | ||||| | | | | ||| ||| Sbjct 1098 ATGCATCGAGGAATTCACGCGTACTGTTTCCGTCCCAAATTCGTATATTCTTCGCTTG-A 1040 Query 118960 AGATCATTAGAGTTTGTAGAACCACTTAAAAACCAAAGAAGCTCCTCAACAACGCCTCTC 119019 || |||| | ||| ||||| ||| ||||| | |||||||||| | || |||| | Sbjct 1039 AGCAATTTAGCATCTGTGGAACCTTTTATGAACCATAAAAGCTCCTCAGCGACTCCTCGC 980 Query 119020 CAAAAAACTGTTTTTGTTGTAAACAGTGGAAACTGA-CCTCTAAGTGAATATCTTGTTTG 119078 ||||| ||| ||| ||||| |||| |||||| ||| || ||| | || | | |||| Sbjct 979 CAAAATACTCGTTTGGTTGTCAACAATGGAAATTGATCCCGTAAATTAA-AGCGCATTTG 921 Query 119079 TGTTCCAAAAATAGACAGAGTCCCAACACCT 119109 || ||||| ||| | ||| ||||||||| Sbjct 920 TGCACCAAATATACTGACAGTTCCAACACCT 890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414326888533828