Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq8363 143 2e-29
seq3668 132 3e-26
>seq8363
Length=52898
Score = 143 bits (158), Expect = 2e-29
Identities = 161/213 (76%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| |||||| | ||||| || || || || |||||||| || | ||
Sbjct 26555 ATGCAGATCTTCGTCAAAACCTTGACGGGTAAGACAATTACCCTCGAAGTCGAGCCATCG 26496
Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||||| | |||| | |||| || || |||||||| | || ||||||||
Sbjct 26495 GACACGATTGAAAATGTTAAGGCTAAAA-TTCAAGATAAAGAAGGAATTCCTCCAGATCA 26437
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| || || || |||||||| |||||| | || || | |||||| || |||| |||||
Sbjct 26436 ACAACGATTGATCTTTGCCGGTAAACAATTAGAGGATGGACGCACATTGAGCGACTACAA 26377
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822
|| || |||||||| ||| | || ||||| ||
Sbjct 26376 TATTCAGAAAGAGTCAACACTTCACTTAGTGTT 26344
>seq3668
Length=32275
Score = 132 bits (146), Expect = 3e-26
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| ||||| || ||||| ||||| | || || ||||| |||||| | |||||||| |
Sbjct 30671 AAGATGCAAATCTTCGTCAAAACATTAACTGGTAAAACCATCACTTTGGAAGTTGAGCCT 30730
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| |||||| | |||| | || ||| || ||||||||||| | || ||||||
Sbjct 30731 TCTGACACTATCGAAAATGTCAAGGCAAAGATCCAAGACAAAGAAGGAATTCCACCAGAT 30790
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
||||| |||||||| || || || |||||| ||||||| | ||| || || | || |||
Sbjct 30791 CAACAACGTTTAATCTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGAGTGACTAC 30850
Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTT 23820
|| || ||||| || || ||||| ||||| |||
Sbjct 30851 AATATCCAAAAGGAATCAACATTGCATTTGGTT 30883
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337887345835916
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |