Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3668 140 8e-28 seq2501 105 2e-17 seq10137 89.7 1e-12 seq19326 84.2 5e-11 >seq3668 Length=32275 Score = 140 bits (154), Expect = 8e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||| ||||||| |||||| || ||| || | |||||||| | || || ||| Sbjct 30870 GTTGATTCCTTTTGGATATTGTAGTCACTCAATGTACGTCCATCTTCCAATTGTTTACCA 30811 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 |||||||| | |||||||| || || ||||| ||||| ||||||||||||||| ||| Sbjct 30810 GCGAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGGATCTTTGCCTTG 30751 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| |||||| ||||| || | || || || || ||||| || || || || || ||| Sbjct 30750 ACATTTTCGATAGTGTCAGAAGGCTCAACTTCCAAAGTGATGGTTTTACCAGTTAATGTT 30691 Query 225697 TTTATGAACACTTGCATTTT 225716 || | ||| | |||||| || Sbjct 30690 TTGACGAAGATTTGCATCTT 30671 >seq2501 Length=14870 Score = 105 bits (116), Expect = 2e-17 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| ||||||||||| || || ||||| || || || ||||| || |||||||| Sbjct 10679 GAAAATTTGTCCATCAGTAATTGAAATGACATTGGTTGGAATGTAAGCTGATACATCACC 10620 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575 ||||||||||||| || |||||||| |||| || ||||||||| Sbjct 10619 AGCTTGTGTTTCGATGACTGGTAAGGCAGTTAAAGAGCCACCACCA 10574 >seq10137 Length=1152 Score = 89.7 bits (98), Expect = 1e-12 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||| ||||||||||| ||||||||||| || | ||| || || ||||| || | Sbjct 1030 TTCTGGATGTCCAAAAAATCAAAATAAATGTTGGTATAAGATTGGGTCTCCTCCACCAGC 1089 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 || |||||||| |||||| | ||||| ||||||||| Sbjct 1090 AGGGTCAAAAAATGAAGTATTTATATTTCGATCAGTTAA 1128 >seq19326 Length=6529 Score = 84.2 bits (92), Expect = 5e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 7735 TTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCT 7794 |||||||| ||| | |||| ||| |||||||||||||| |||||||||| | | | Sbjct 4620 TTGGTAAGGTTCCTCGCGTATCATCGAATTAAACCACATAATCCACCGCTTGTGCGGGCC 4679 Query 7795 TCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG 7843 |||||| || |||||||||| | |||||| |||| | | ||||||| Sbjct 4680 CCCGTCAATTCCTTTGAGTTTCATTCTTGCGAACGTACTCCCCAGGTGG 4728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192077756035838