Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq3668 140 8e-28
seq2501 105 2e-17
seq10137 89.7 1e-12
seq19326 84.2 5e-11
>seq3668
Length=32275
Score = 140 bits (154), Expect = 8e-28
Identities = 151/200 (76%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576
|| ||||| ||||||| |||||| || ||| || | |||||||| | || || |||
Sbjct 30870 GTTGATTCCTTTTGGATATTGTAGTCACTCAATGTACGTCCATCTTCCAATTGTTTACCA 30811
Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636
|||||||| | |||||||| || || ||||| ||||| ||||||||||||||| |||
Sbjct 30810 GCGAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGGATCTTTGCCTTG 30751
Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696
||| |||||| ||||| || | || || || || ||||| || || || || || |||
Sbjct 30750 ACATTTTCGATAGTGTCAGAAGGCTCAACTTCCAAAGTGATGGTTTTACCAGTTAATGTT 30691
Query 225697 TTTATGAACACTTGCATTTT 225716
|| | ||| | |||||| ||
Sbjct 30690 TTGACGAAGATTTGCATCTT 30671
>seq2501
Length=14870
Score = 105 bits (116), Expect = 2e-17
Identities = 87/106 (82%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529
||| ||||| ||||||||||| || || ||||| || || || ||||| || ||||||||
Sbjct 10679 GAAAATTTGTCCATCAGTAATTGAAATGACATTGGTTGGAATGTAAGCTGATACATCACC 10620
Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575
||||||||||||| || |||||||| |||| || |||||||||
Sbjct 10619 AGCTTGTGTTTCGATGACTGGTAAGGCAGTTAAAGAGCCACCACCA 10574
>seq10137
Length=1152
Score = 89.7 bits (98), Expect = 1e-12
Identities = 79/99 (80%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731
||| ||||| ||||||||||| ||||||||||| || | ||| || || ||||| || |
Sbjct 1030 TTCTGGATGTCCAAAAAATCAAAATAAATGTTGGTATAAGATTGGGTCTCCTCCACCAGC 1089
Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770
|| |||||||| |||||| | ||||| |||||||||
Sbjct 1090 AGGGTCAAAAAATGAAGTATTTATATTTCGATCAGTTAA 1128
>seq19326
Length=6529
Score = 84.2 bits (92), Expect = 5e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 7735 TTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCT 7794
|||||||| ||| | |||| ||| |||||||||||||| |||||||||| | | |
Sbjct 4620 TTGGTAAGGTTCCTCGCGTATCATCGAATTAAACCACATAATCCACCGCTTGTGCGGGCC 4679
Query 7795 TCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG 7843
|||||| || |||||||||| | |||||| |||| | | |||||||
Sbjct 4680 CCCGTCAATTCCTTTGAGTTTCATTCTTGCGAACGTACTCCCCAGGTGG 4728
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192077756035838
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |