Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq9081 260 1e-64
seq12008 107 2e-18
>seq9081
Length=2203
Score = 260 bits (288), Expect = 1e-64
Identities = 442/634 (70%), Gaps = 10/634 (2%)
Strand=Plus/Plus
Query 4440 ACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCT 4499
|| || || |||| |||||||| || | ||| || |||| || |||||||| || ||
Sbjct 231 ACTGGAAGTGCGTCAGTCAAAAATTCCTTTTCAATCTTTACAGCCTCTGTGATAATTTCA 290
Query 4500 TTTATTTTATCTTTAGATGGTTTATTTACTAAG-TATCCAAACAATAAACACGCAAAATC 4558
| | ||||| | ||| || | | |||| | | ||| ||| || ||||| ||
Sbjct 291 ACAACTCGTTCTTTTGGTGGCTTCTGAA-TAAGATGTTTGTACATTAAGCATGCAAAGTC 349
Query 4559 ACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAA 4618
|| ||| | ||||||||||| ||| ||||| || || || || || || ||||||||
Sbjct 350 ACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAGAATGTCAAACCTGGCATTAA 409
Query 4619 ACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTAC 4678
|| | ||| |||| |||||| || || ||||| ||| |||||| || || || ||
Sbjct 410 TCCACGCTTCTTAATCCAAAAGATTGCTGCAAAGCTTCCACTAAAGAAAATCCCCTCGAC 469
Query 4679 GGCGGCAAACGCTACTAATCGGGACCCGAACGA-GCTGGCTTTGTCTTTAATCCATTTTA 4737
|| ||||| || | | ||| || || || |||| | || |||| ||||
Sbjct 470 AGCAGCAAAGGCAATAACTCGTTCACCAAAGTTTGCATGCTTACTGGATA-TCCAATTTA 528
Query 4738 ATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAAT---T 4794
| ||||||| || |||||||| |||||||| | || | ||||| || ||||| |
Sbjct 529 AGGCCCAGTCTGCCTTTTTCTTTACGCACGGTAAAGTCTCAATAGCATTGAATAAGAAGT 588
Query 4795 TACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAAT 4854
|| | | || || | |||||||| || ||||| | ||||| || || |
Sbjct 589 CACGCTGCTT---TGCATCACGGATATAAGTTTCAATTAGAATCGAGTACATCTCTGAGT 645
Query 4855 GTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTT 4914
||| |||||| |||||||| || ||||| |||||| ||| ||||||||||||||||||||
Sbjct 646 GTACATTTTCCATAGCAATTTGGAATCCATAAAAGAATCGAGCTTCTGTTACTTGAACTT 705
Query 4915 CGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACG 4974
| | || |||| ||| | |||||| || ||||| || ||||| || ||||| || |
Sbjct 706 CCTGACTGAATCGTTCAATTAAGTTCTCATTTACAATGCCGTCTGATGCAGCAAAGAATG 765
Query 4975 CCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAAT 5034
| || || || || ||||||| |||| | ||| | ||||| ||||| || ||
Sbjct 766 CTAATACGTGTGAGATAAAGTGACGTTCTGAATCCTTTAATTTTTCCCAGTCACTCATAT 825
Query 5035 CTTTAGTTAAATCAACTTCTTCAACAGTCCAAAA 5068
|||| | |||||| |||||||| || ||||| ||
Sbjct 826 CTTTTGATAAATCGACTTCTTCGACTGTCCAGAA 859
>seq12008
Length=33819
Score = 107 bits (118), Expect = 2e-18
Identities = 115/152 (76%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 31770 TAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTA 31829
|||| ||||| || || ||||| | || ||||||||| |||||||| || |||
Sbjct 14905 TAGTCAAAACAGACATCCAAATAGAACTTCCAGAAGGGTGCTATGGACGAATTGCACCTC 14846
Query 31830 GATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACT 31889
| || ||||| ||||||||| ||||||| ||||| ||||| || ||| | ||| ||| |
Sbjct 14845 GTTCAGGATTAGCAGTTAAAAACTTTATTGACGTTGGTGCAGGAGTTGTCGATGAAGATT 14786
Query 31890 ATAGAGGAAACGTTGGAATTGTGTTGTTTAAT 31921
||||||||||| | || | || ||||||||
Sbjct 14785 ATAGAGGAAACTTGGGTGTAGTCATGTTTAAT 14754
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426895141097441
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |