Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq9081 260 1e-64 seq12008 107 2e-18 >seq9081 Length=2203 Score = 260 bits (288), Expect = 1e-64 Identities = 442/634 (70%), Gaps = 10/634 (2%) Strand=Plus/Plus Query 4440 ACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCT 4499 || || || |||| |||||||| || | ||| || |||| || |||||||| || || Sbjct 231 ACTGGAAGTGCGTCAGTCAAAAATTCCTTTTCAATCTTTACAGCCTCTGTGATAATTTCA 290 Query 4500 TTTATTTTATCTTTAGATGGTTTATTTACTAAG-TATCCAAACAATAAACACGCAAAATC 4558 | | ||||| | ||| || | | |||| | | ||| ||| || ||||| || Sbjct 291 ACAACTCGTTCTTTTGGTGGCTTCTGAA-TAAGATGTTTGTACATTAAGCATGCAAAGTC 349 Query 4559 ACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAA 4618 || ||| | ||||||||||| ||| ||||| || || || || || || |||||||| Sbjct 350 ACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAGAATGTCAAACCTGGCATTAA 409 Query 4619 ACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTAC 4678 || | ||| |||| |||||| || || ||||| ||| |||||| || || || || Sbjct 410 TCCACGCTTCTTAATCCAAAAGATTGCTGCAAAGCTTCCACTAAAGAAAATCCCCTCGAC 469 Query 4679 GGCGGCAAACGCTACTAATCGGGACCCGAACGA-GCTGGCTTTGTCTTTAATCCATTTTA 4737 || ||||| || | | ||| || || || |||| | || |||| |||| Sbjct 470 AGCAGCAAAGGCAATAACTCGTTCACCAAAGTTTGCATGCTTACTGGATA-TCCAATTTA 528 Query 4738 ATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAAT---T 4794 | ||||||| || |||||||| |||||||| | || | ||||| || ||||| | Sbjct 529 AGGCCCAGTCTGCCTTTTTCTTTACGCACGGTAAAGTCTCAATAGCATTGAATAAGAAGT 588 Query 4795 TACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAAT 4854 || | | || || | |||||||| || ||||| | ||||| || || | Sbjct 589 CACGCTGCTT---TGCATCACGGATATAAGTTTCAATTAGAATCGAGTACATCTCTGAGT 645 Query 4855 GTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTT 4914 ||| |||||| |||||||| || ||||| |||||| ||| |||||||||||||||||||| Sbjct 646 GTACATTTTCCATAGCAATTTGGAATCCATAAAAGAATCGAGCTTCTGTTACTTGAACTT 705 Query 4915 CGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACG 4974 | | || |||| ||| | |||||| || ||||| || ||||| || ||||| || | Sbjct 706 CCTGACTGAATCGTTCAATTAAGTTCTCATTTACAATGCCGTCTGATGCAGCAAAGAATG 765 Query 4975 CCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAAT 5034 | || || || || ||||||| |||| | ||| | ||||| ||||| || || Sbjct 766 CTAATACGTGTGAGATAAAGTGACGTTCTGAATCCTTTAATTTTTCCCAGTCACTCATAT 825 Query 5035 CTTTAGTTAAATCAACTTCTTCAACAGTCCAAAA 5068 |||| | |||||| |||||||| || ||||| || Sbjct 826 CTTTTGATAAATCGACTTCTTCGACTGTCCAGAA 859 >seq12008 Length=33819 Score = 107 bits (118), Expect = 2e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 31770 TAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTA 31829 |||| ||||| || || ||||| | || ||||||||| |||||||| || ||| Sbjct 14905 TAGTCAAAACAGACATCCAAATAGAACTTCCAGAAGGGTGCTATGGACGAATTGCACCTC 14846 Query 31830 GATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACT 31889 | || ||||| ||||||||| ||||||| ||||| ||||| || ||| | ||| ||| | Sbjct 14845 GTTCAGGATTAGCAGTTAAAAACTTTATTGACGTTGGTGCAGGAGTTGTCGATGAAGATT 14786 Query 31890 ATAGAGGAAACGTTGGAATTGTGTTGTTTAAT 31921 ||||||||||| | || | || |||||||| Sbjct 14785 ATAGAGGAAACTTGGGTGTAGTCATGTTTAAT 14754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426895141097441