Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_031011.1 Length=168993 Score E Sequences producing significant alignments: (Bits) Value seq7918 118 1e-21 >seq7918 Length=32631 Score = 118 bits (130), Expect = 1e-21 Identities = 273/410 (67%), Gaps = 6/410 (1%) Strand=Plus/Plus Query 38199 TTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTT 38258 ||||| || || |||||||||| ||| || | || ||||| || ||||| || ||| Sbjct 18042 TTCAGCTGTACCCCATAATCCAGATGGCGTACCCGATTTTCCTCAACGCCCCGATTGTTT 18101 Query 38259 TTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCG 38318 || || || | || ||| ||||| |||||| | ||||| | ||||| || Sbjct 18102 TTTAACACTAACAGGGCTTCTACTTCGCGATGCCATAGCGGATAGAAGAGGGTAGCGGCT 18161 Query 38319 CCGCCACGAATTCCGCCCTGTGAACATGAGTTAACTGCAGCCTGAAAATGTTTCCAAAAA 38378 || || || | ||||| || || || || || || || | || |||||||| ||||| Sbjct 18162 CCCCCGCGCACACCGCCTTGGGAGCACGATTTGACGGCTGTTTGGAAATGTTTGTAAAAA 18221 Query 38379 GGAATAACACCAGGATGGCATACATCACCCATGCCAATCTCAGAACCTTCGGCACGAATC 38438 |||||| || | ||| | | ||||| || ||| ||| ||| || ||| Sbjct 18222 GGAATACAGCCGGTATGAAAGGCCTCACCGCCGCGAATGGGGCTGCCTAAGGCGCGGATC 18281 Query 38439 ATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAATTGAA---GCG 38495 | || | ||||| ||||| || || |||| ||||| |||| ||||| | | ||| Sbjct 18282 TTGCCGGCATTAATCCCAATACCGGCACGTTGAGAGACGTATTTCACAATGGCACTGGCG 18341 Query 38496 GAAGCCTTATTGATAGACTTCAATGAATCACCTGCCTCAATAACAACACATGAACTAAAC 38555 | || |||||| || | || ||| | ||| || | ||||| || ||||| Sbjct 18342 GTGGC---ATTGATGGAGTCTAAACTATCTGCACACTCGATTAACACACAAGAGCTAAAT 18398 Query 38556 TGTCGAGTCGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAATGAAAT 38605 || || || || ||||| ||| |||||||| ||||| |||| ||||| Sbjct 18399 TGACGGGTTGGGGTACGAACACCCGCCATAATCGGAGTAGGCAGCGAAAT 18448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540449039272760