Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq5596 542 4e-149
seq9081 282 6e-71
>seq5596
Length=16775
Score = 542 bits (600), Expect = 4e-149
Identities = 1148/1704 (67%), Gaps = 32/1704 (2%)
Strand=Plus/Plus
Query 76773 TTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCA 76832
||||| | ||||| ||||| | | | || | |||||| | || || ||||| |||
Sbjct 11250 TTATCAACAGTAAATTGAATAGCATTCGCAGCAGCTTTTGTTCTTAAGTAATACATTCCA 11309
Query 76833 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGA 76892
||||| || |||| ||||||| || ||||| || ||||| ||| |||| | ||
Sbjct 11310 GTTTTAAGTCCCAACTTCCATCCATAAAAATGAATAGATGTCAATTTCCCATAATTTGGT 11369
Query 76893 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 76952
|| |||| ||||||||| | || |||||||||||||| |||||||| | |||||| |||
Sbjct 11370 TCCGCTACATGAATATTGAATGATTGACTTTGATCGATAAAAGCTCCACGATCAGCTGCC 11429
Query 76953 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCA 77012
|||| || ||||| || |||||||| | ||||| ||| | ||| ||||||
Sbjct 11430 ATTTGAATTTGTGTCTTGACAGATATTTCCCATACTGTTTTATAAATGTTTTTAATATCA 11489
Query 77013 TCTGGAAGGTTT-----GTATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTA 77067
|| |||| ||| || ||| || || ||| || | |||||| |||||| |
Sbjct 11490 TCAGGAA--TTTCATCAATAGCTTGTATTGAGCCATTATTTCCAATAATTTGATTCTTCA 11547
Query 77068 TATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTT 77127
| ||||||| ||| || | ||||| ||| | ||| |||||| ||||||| | ||
Sbjct 11548 TGTCATCATCCCATAAACCACGTTCTGTCAAATCCTTAATAAGATGATGATTAACAACTT 11607
Query 77128 GAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATT 77187
|||| |||||| | || | |||| | |||| |||||| || || ||||| | | |
Sbjct 11608 GAAACTCTCCACTAAGCACACGACGATTATAAACATTACTTGTGTACGGTTCAAAACTCT 11667
Query 77188 CATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTAT 77247
|||| || || ||||| ||||| || || ||||||||||| ||||| | || || ||
Sbjct 11668 CATTATTACCTAAAATCTGAGCTGTTGATGCAGTTGGCATTGGTGCTAATAACAATGAAT 11727
Query 77248 TTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAG 77307
| | |||||| | ||||||| ||||||| || ||||||||| | || | |
Sbjct 11728 TACGAAGACCAAAATTCTTGATTTTTTCTTTTAATGCTTCCCAATCCCACAAGTCAGTTG 11787
Query 77308 GTACAACATCCCAAAGATCGTATTGTAGAATTCC----GTTACTAGCATATGATCCATTA 77363
|| ||||| | ||| ||||||| || || | |||| | |||| | |
Sbjct 11788 GTGTCTTTTCCCACATATCATATTGTAATATACCTTTTGATACTGG----ACATCCTTCA 11843
Query 77364 TATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAA 77423
|| || ||||||| ||| | ||||||| | |||||| |||| || || ||||| |||
Sbjct 11844 TACGTCTCATAAGTTCCAAGTTTTTCAGCCAATTCACAGCTCGACTCTAAAGCTCCATAA 11903
Query 77424 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGG-ATA 77482
|||||||| || || || | | ||| | || |||||| | || | || ||
Sbjct 11904 TAAATTGTCTCAAATATTTGTTGATTTAATAATTTAGCTTCATCAGACTCGTATGGCATT 11963
Query 77483 ATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCT 77542
| | | ||||||||||| |||||||| |||| |||||| || || || | ||||||
Sbjct 11964 CT-CATCAATATAAAGGCATCAGCTAATCCTTGAATTCCAATTCCGATTGGACGATGTCT 12022
Query 77543 CTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAG 77602
|| || |||||||||| || ||||| |||||| || ||||||||||| |
Sbjct 12023 AAAGTTTGATCGTTTAGCTTCTTCAACTGGATAGAAATTAACTTCAATAATTTTATTTAA 12082
Query 77603 ATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCA-AATCTT--CCATC 77659
|||||| |||| || || ||||| | |||| | |||||| | |||| | ||
Sbjct 12083 ATTTCTTGTGACTATCTTTGTGACTTCCTTCAATTTATGGAAATCATATTCTTTACGATT 12142
Query 77660 T---ATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGC 77716
| | |||||||| || || || || ||||||| |||||| || || || ||||
Sbjct 12143 TGGCTTGACAAACATATTTAAGGCAATTGATGCTAAATTACAGACAGCAACTTCATCTTT 12202
Query 77717 GTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTG 77776
| | |||||| | || || ||||||| ||| || ||| || || ||||| ||
Sbjct 12203 ACTTGAATATTGGACAATTTCAGTACATAAATTTGAGCAACGGATTGTTCCAAGATTCTG 12262
Query 77777 TTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAAT 77836
||| || || ||| |||| |||||||| || ||| | || || || || ||||
Sbjct 12263 TTGATTCGATTTACGATTACATGCATCCTTATACAGCATATAAGGTGTTCCTGTCTCAAC 12322
Query 77837 CTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCGCCT 77896
|| ||||| ||||| | ||| | || || |||| | | |||| |
Sbjct 12323 TTGAGATTCAATAATTGCAAACCATAAATCTTGTGCCTTTACTTGACGAATAAATCGTCC 12382
Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956
||| ||||||| || ||||||| ||||||||| | || || |||| | ||
Sbjct 12383 TTCTGCTTCATATCGAATATATAGATTTTCAAATTCTTTACCATAAGTCTCATAAAGACC 12442
Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016
|| || || || ||||| || ||||| ||| | | ||| |||| ||||||
Sbjct 12443 TGGACAGCTATGAGGACACATTAAAGACCACATTTCATTGTTTTCAACACGTTGCATAAA 12502
Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGT 78076
| ||||| ||||||| |||| ||| | ||||| | | | |||||| ||||| ||
Sbjct 12503 CAAGTCAGGAATCCATAAAGCATAAAACATATCTCTAGCACGAACTTCTTCTTTTCCAGT 12562
Query 78077 ATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGC 78136
||| || || | ||| |||||||| | || ||| |||||| ||||| | ||| | |||
Sbjct 12563 ATTTTTCTTTAAATCTAGAAACTCAAAAACATCTCCATGCCAAGGTTCCAAATAGACTGC 12622
Query 78137 CATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAAC 78196
| | ||||| ||||||||||| || ||||| | ||| | || || ||||| |||||
Sbjct 12623 AAATGCACCAGGACGTTTATTACCACCTTGATCAACATAACGTGCTGTATTATTGTAAAC 12682
Query 78197 TCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACT 78256
||||||||| || | | ||| || || | |||||||| |||| ||||| | || |
Sbjct 12683 TCTCAACATAGGTACGAGACCATTCGAAATCCCATTTGTACCAGCTATATATGTCCCTTT 12742
Query 78257 TGCGCGAATATTACTAATGGATAT----CCCTATTCCTCCTGCCATCTTAGATATTAGAG 78312
|| |||||| |||| | || || ||||| ||||| || ||||| |
Sbjct 12743 TGAACGAATA----CAATGAACATTAACGCCAATTCCACCTGCTGATTTGCTAATTAGCG 12798
Query 78313 CGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAA 78372
|||| | || || || || || || ||||| || |||||| ||| |||||||
Sbjct 12799 CGCATTGCTTTAAAGTGTCATAAATTCCCTCGATTGAGTCATCAGACATTGAGAGAAGAA 12858
Query 78373 AACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCG 78432
| || ||||| |||| || | || |||| || | ||| || |||||||| |
Sbjct 12859 AGCATGAAGACAATTGAGGACGTGGTGTAGCTGCTGCGAAAAGTGTTGGTGATGCATGTG 12918
Query 78433 TAAACCATTTTTCAGAAAGTAGAT 78456
| || || | | ||||||| ||
Sbjct 12919 TGAAGAATCTAT-TGAAAGTAAAT 12941
Score = 159 bits (176), Expect = 5e-34
Identities = 327/479 (68%), Gaps = 14/479 (3%)
Strand=Plus/Plus
Query 78442 TTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTA 78501
||||||| | ||||||||||| |||||||||| || || ||| | |||||| || |
Sbjct 12991 TTTCAGACAACAGATTGTATGTCTCAATAGCTGCATCAATATCCTCTCCATGAATACCAA 13050
Query 78502 CCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACA 78561
| || || | ||| | |||||| || || | ||| | | || || || || ||||
Sbjct 13051 CAGCAACTCTCATAAGCATATGTTGTGGACGTTCTGCAATTTTTCCCTTGATCTTTAACA 13110
Query 78562 AGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAA 78621
|| | ||| || |||||||||||||||||||||||| || |||| || || |
Sbjct 13111 GATAGCTTCGTTCTAAGGTTTTAAAACCAAAATAGTTGTATCCGAAATCTCGATCATAGA 13170
Query 78622 TAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATATCCATGACAGTAGTTGA-A 78680
| ||| | ||||| ||| ||| | ||| ||| || | |||| | | | | |
Sbjct 13171 TTATAGCTGAATTAAGTCGATCGGCATTTTTCATAATGATCTT-ATGATGGAATTCGCTA 13229
Query 78681 ATAATAGGAGATCGTACACCATTTTTAGG-ATTAA-----CATAGTTAAATAAATCTTCC 78734
|| || || ||| || | ||||| ||| | |||| ||| | | ||| |||
Sbjct 13230 ATCATTGGGGATT-TAGTC----TTTAGATATTCATTTTCCATA-TTATAAAGATCATCC 13283
Query 78735 ATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCA 78794
|| || |||||||| |||| || || || ||||| || ||||| | || |||||||||
Sbjct 13284 ATGACTTCACTAAACTGTTTCTTAGTCTCTTTGTGAAGGTTAGAAATGGCAATTCTTGCA 13343
Query 78795 GCTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAA 78854
|||| || ||||||||| | ||| | |||||| || |||||| |||| || ||||||
Sbjct 13344 GCTAAAACAGCATAATCTGCATGATCTGTAGTCATCGTTGCTGCTGTTTCAGCTGCTAAA 13403
Query 78855 ATATCTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGAT 78913
|||| | || ||||| || || |||| | || | || ||||| | || |||
Sbjct 13404 TTATCCAGTTCCTGTGTTGTTACTCCTGTATACAACCCATTGATTACTTTAAAGGTGAT 13462
>seq9081
Length=2203
Score = 282 bits (312), Expect = 6e-71
Identities = 575/837 (69%), Gaps = 23/837 (3%)
Strand=Plus/Plus
Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTC--TCGAAAAAATTAGTTTTGC 47892
||||| ||||| | ||||||||||| || || |||| || || || ||||| ||||
Sbjct 33 GACATGACTCCACTCTTTTGATATTCGCCAACC--TTTCGTTCAAAGAAGTTAGTCTTGC 90
Query 47893 CTTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAA 47952
| || | ||| || ||||||||| |||||||| | |||||| | || | ||
Sbjct 91 CCTCAAGTGAAATTAATTCCATAAATGAGAATGGATTTTTGGTATTATAGACCTTGTCAA 150
Query 47953 ATCCTAATTCTGA-AATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCA 48011
||| ||||| ||| | | ||| || |||||||| || ||| ||| | |||
Sbjct 151 GTCCCAATTCGCCTAATAAATG-ATCGGCTACGAATTCAATGTATTCAGACATTAAATCA 209
Query 48012 CAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTG 48071
|||||||| || | | || ||||| || || || || | ||| || | ||| || |
Sbjct 210 CAATTCATGCCCAACATCTTTACTGGAAGTGCGTCAGTCAAAAATTCCTTTTCAATCTTT 269
Query 48072 ACAGCATCCACTATTATCGATGTTACCGTTTCCT-CACTTGGTGGATAC--AACAA-ATG 48127
||||| || | | || || | | | || | | ||||||| | | || || |||
Sbjct 270 ACAGCCTC---TGTGATA-ATTTCAACAACTCGTTCTTTTGGTGGCTTCTGAATAAGATG 325
Query 48128 TTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTT 48187
||| ||||||| |||||||| |||| |||||| ||||| ||||| ||| | ||| ||
Sbjct 326 TTTGTACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATT 385
Query 48188 AGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGA 48247
|| ||||| | ||| ||||||| |||||| || || | |||||| ||||| || ||
Sbjct 386 TGAGAATGTCAAACCTGGCATTAATCCACGCTTCTTAATCCAAAAGATTGCTGCAAAGCT 445
Query 48248 TCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGC 48307
|||| |||||| || || || || || ||||| || ||| || || || | | ||
Sbjct 446 TCCACTAAAGAAAATCCCCTCGACAGCAGCAAAGGCAATAACTCGTTCACCAAAGTTTGC 505
Query 48308 TTCGTTG-TG--TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGT 48364
| || || |||||| | ||||| || ||||| |||||||| || || | ||
Sbjct 506 ATGCTTACTGGATATCCAATTTAAGGCCCAGTCTGCCTTTTTCTTTACGCACGGTAAAGT 565
Query 48365 TTCTATAGCATTAAAGAGAAAGttttttt-CATTGCTATCTTTAACGTAAGTATCTATTA 48423
|| |||||||| || | |||| | | |||| ||| | ||||| || ||||
Sbjct 566 CTCAATAGCATTGAATAAGAAGTCACGCTGCTTTGC-ATCACGGATATAAGTTTCAATTA 624
Query 48424 AAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATC 48483
|| ||||| || ||||| | |||||| || || || || ||||| ||||| |||
Sbjct 625 GAATCGAGTACATCTCTGAGTGTACATTTTCCATAGCAATTTGGAATCCATAAAAGAATC 684
Query 48484 TCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTC 48543
|||||||| | || || ||| || ||||||||| || ||||||||||| || |
Sbjct 685 GAGCTTCTGTTACTTGAACTTCCTGACTGAATCGTTCAATTAAGTTCTCATTTACAATGC 744
Query 48544 CATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGA--AGT 48601
| || |||||||| ||||||||||| ||| ||||| | ||| || | |
Sbjct 745 CGTCTGATGCAGCAAAGAATGCTAATACGTGTGAGATAAAGTGACGTTC--TGAATCCTT 802
Query 48602 CAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAA 48658
| ||| | ||||||| | ||||||||||||| ||| |||||||| ||||||| ||
Sbjct 803 TAATTTTTCCCAGTCACTCATATCTTTTGATAAATCGACTTCTTCGACTGTCCAGAA 859
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694411103925280
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