Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq5596 542 4e-149 seq9081 282 6e-71 >seq5596 Length=16775 Score = 542 bits (600), Expect = 4e-149 Identities = 1148/1704 (67%), Gaps = 32/1704 (2%) Strand=Plus/Plus Query 76773 TTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCA 76832 ||||| | ||||| ||||| | | | || | |||||| | || || ||||| ||| Sbjct 11250 TTATCAACAGTAAATTGAATAGCATTCGCAGCAGCTTTTGTTCTTAAGTAATACATTCCA 11309 Query 76833 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGA 76892 ||||| || |||| ||||||| || ||||| || ||||| ||| |||| | || Sbjct 11310 GTTTTAAGTCCCAACTTCCATCCATAAAAATGAATAGATGTCAATTTCCCATAATTTGGT 11369 Query 76893 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 76952 || |||| ||||||||| | || |||||||||||||| |||||||| | |||||| ||| Sbjct 11370 TCCGCTACATGAATATTGAATGATTGACTTTGATCGATAAAAGCTCCACGATCAGCTGCC 11429 Query 76953 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCA 77012 |||| || ||||| || |||||||| | ||||| ||| | ||| |||||| Sbjct 11430 ATTTGAATTTGTGTCTTGACAGATATTTCCCATACTGTTTTATAAATGTTTTTAATATCA 11489 Query 77013 TCTGGAAGGTTT-----GTATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTA 77067 || |||| ||| || ||| || || ||| || | |||||| |||||| | Sbjct 11490 TCAGGAA--TTTCATCAATAGCTTGTATTGAGCCATTATTTCCAATAATTTGATTCTTCA 11547 Query 77068 TATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTT 77127 | ||||||| ||| || | ||||| ||| | ||| |||||| ||||||| | || Sbjct 11548 TGTCATCATCCCATAAACCACGTTCTGTCAAATCCTTAATAAGATGATGATTAACAACTT 11607 Query 77128 GAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATT 77187 |||| |||||| | || | |||| | |||| |||||| || || ||||| | | | Sbjct 11608 GAAACTCTCCACTAAGCACACGACGATTATAAACATTACTTGTGTACGGTTCAAAACTCT 11667 Query 77188 CATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTAT 77247 |||| || || ||||| ||||| || || ||||||||||| ||||| | || || || Sbjct 11668 CATTATTACCTAAAATCTGAGCTGTTGATGCAGTTGGCATTGGTGCTAATAACAATGAAT 11727 Query 77248 TTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAG 77307 | | |||||| | ||||||| ||||||| || ||||||||| | || | | Sbjct 11728 TACGAAGACCAAAATTCTTGATTTTTTCTTTTAATGCTTCCCAATCCCACAAGTCAGTTG 11787 Query 77308 GTACAACATCCCAAAGATCGTATTGTAGAATTCC----GTTACTAGCATATGATCCATTA 77363 || ||||| | ||| ||||||| || || | |||| | |||| | | Sbjct 11788 GTGTCTTTTCCCACATATCATATTGTAATATACCTTTTGATACTGG----ACATCCTTCA 11843 Query 77364 TATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAA 77423 || || ||||||| ||| | ||||||| | |||||| |||| || || ||||| ||| Sbjct 11844 TACGTCTCATAAGTTCCAAGTTTTTCAGCCAATTCACAGCTCGACTCTAAAGCTCCATAA 11903 Query 77424 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGG-ATA 77482 |||||||| || || || | | ||| | || |||||| | || | || || Sbjct 11904 TAAATTGTCTCAAATATTTGTTGATTTAATAATTTAGCTTCATCAGACTCGTATGGCATT 11963 Query 77483 ATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCT 77542 | | | ||||||||||| |||||||| |||| |||||| || || || | |||||| Sbjct 11964 CT-CATCAATATAAAGGCATCAGCTAATCCTTGAATTCCAATTCCGATTGGACGATGTCT 12022 Query 77543 CTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAG 77602 || || |||||||||| || ||||| |||||| || ||||||||||| | Sbjct 12023 AAAGTTTGATCGTTTAGCTTCTTCAACTGGATAGAAATTAACTTCAATAATTTTATTTAA 12082 Query 77603 ATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCA-AATCTT--CCATC 77659 |||||| |||| || || ||||| | |||| | |||||| | |||| | || Sbjct 12083 ATTTCTTGTGACTATCTTTGTGACTTCCTTCAATTTATGGAAATCATATTCTTTACGATT 12142 Query 77660 T---ATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGC 77716 | | |||||||| || || || || ||||||| |||||| || || || |||| Sbjct 12143 TGGCTTGACAAACATATTTAAGGCAATTGATGCTAAATTACAGACAGCAACTTCATCTTT 12202 Query 77717 GTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTG 77776 | | |||||| | || || ||||||| ||| || ||| || || ||||| || Sbjct 12203 ACTTGAATATTGGACAATTTCAGTACATAAATTTGAGCAACGGATTGTTCCAAGATTCTG 12262 Query 77777 TTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAAT 77836 ||| || || ||| |||| |||||||| || ||| | || || || || |||| Sbjct 12263 TTGATTCGATTTACGATTACATGCATCCTTATACAGCATATAAGGTGTTCCTGTCTCAAC 12322 Query 77837 CTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCGCCT 77896 || ||||| ||||| | ||| | || || |||| | | |||| | Sbjct 12323 TTGAGATTCAATAATTGCAAACCATAAATCTTGTGCCTTTACTTGACGAATAAATCGTCC 12382 Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 ||| ||||||| || ||||||| ||||||||| | || || |||| | || Sbjct 12383 TTCTGCTTCATATCGAATATATAGATTTTCAAATTCTTTACCATAAGTCTCATAAAGACC 12442 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 || || || || ||||| || ||||| ||| | | ||| |||| |||||| Sbjct 12443 TGGACAGCTATGAGGACACATTAAAGACCACATTTCATTGTTTTCAACACGTTGCATAAA 12502 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGT 78076 | ||||| ||||||| |||| ||| | ||||| | | | |||||| ||||| || Sbjct 12503 CAAGTCAGGAATCCATAAAGCATAAAACATATCTCTAGCACGAACTTCTTCTTTTCCAGT 12562 Query 78077 ATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGC 78136 ||| || || | ||| |||||||| | || ||| |||||| ||||| | ||| | ||| Sbjct 12563 ATTTTTCTTTAAATCTAGAAACTCAAAAACATCTCCATGCCAAGGTTCCAAATAGACTGC 12622 Query 78137 CATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAAC 78196 | | ||||| ||||||||||| || ||||| | ||| | || || ||||| ||||| Sbjct 12623 AAATGCACCAGGACGTTTATTACCACCTTGATCAACATAACGTGCTGTATTATTGTAAAC 12682 Query 78197 TCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACT 78256 ||||||||| || | | ||| || || | |||||||| |||| ||||| | || | Sbjct 12683 TCTCAACATAGGTACGAGACCATTCGAAATCCCATTTGTACCAGCTATATATGTCCCTTT 12742 Query 78257 TGCGCGAATATTACTAATGGATAT----CCCTATTCCTCCTGCCATCTTAGATATTAGAG 78312 || |||||| |||| | || || ||||| ||||| || ||||| | Sbjct 12743 TGAACGAATA----CAATGAACATTAACGCCAATTCCACCTGCTGATTTGCTAATTAGCG 12798 Query 78313 CGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAA 78372 |||| | || || || || || || ||||| || |||||| ||| ||||||| Sbjct 12799 CGCATTGCTTTAAAGTGTCATAAATTCCCTCGATTGAGTCATCAGACATTGAGAGAAGAA 12858 Query 78373 AACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCG 78432 | || ||||| |||| || | || |||| || | ||| || |||||||| | Sbjct 12859 AGCATGAAGACAATTGAGGACGTGGTGTAGCTGCTGCGAAAAGTGTTGGTGATGCATGTG 12918 Query 78433 TAAACCATTTTTCAGAAAGTAGAT 78456 | || || | | ||||||| || Sbjct 12919 TGAAGAATCTAT-TGAAAGTAAAT 12941 Score = 159 bits (176), Expect = 5e-34 Identities = 327/479 (68%), Gaps = 14/479 (3%) Strand=Plus/Plus Query 78442 TTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTA 78501 ||||||| | ||||||||||| |||||||||| || || ||| | |||||| || | Sbjct 12991 TTTCAGACAACAGATTGTATGTCTCAATAGCTGCATCAATATCCTCTCCATGAATACCAA 13050 Query 78502 CCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACA 78561 | || || | ||| | |||||| || || | ||| | | || || || || |||| Sbjct 13051 CAGCAACTCTCATAAGCATATGTTGTGGACGTTCTGCAATTTTTCCCTTGATCTTTAACA 13110 Query 78562 AGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAA 78621 || | ||| || |||||||||||||||||||||||| || |||| || || | Sbjct 13111 GATAGCTTCGTTCTAAGGTTTTAAAACCAAAATAGTTGTATCCGAAATCTCGATCATAGA 13170 Query 78622 TAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATATCCATGACAGTAGTTGA-A 78680 | ||| | ||||| ||| ||| | ||| ||| || | |||| | | | | | Sbjct 13171 TTATAGCTGAATTAAGTCGATCGGCATTTTTCATAATGATCTT-ATGATGGAATTCGCTA 13229 Query 78681 ATAATAGGAGATCGTACACCATTTTTAGG-ATTAA-----CATAGTTAAATAAATCTTCC 78734 || || || ||| || | ||||| ||| | |||| ||| | | ||| ||| Sbjct 13230 ATCATTGGGGATT-TAGTC----TTTAGATATTCATTTTCCATA-TTATAAAGATCATCC 13283 Query 78735 ATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCA 78794 || || |||||||| |||| || || || ||||| || ||||| | || ||||||||| Sbjct 13284 ATGACTTCACTAAACTGTTTCTTAGTCTCTTTGTGAAGGTTAGAAATGGCAATTCTTGCA 13343 Query 78795 GCTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAA 78854 |||| || ||||||||| | ||| | |||||| || |||||| |||| || |||||| Sbjct 13344 GCTAAAACAGCATAATCTGCATGATCTGTAGTCATCGTTGCTGCTGTTTCAGCTGCTAAA 13403 Query 78855 ATATCTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGAT 78913 |||| | || ||||| || || |||| | || | || ||||| | || ||| Sbjct 13404 TTATCCAGTTCCTGTGTTGTTACTCCTGTATACAACCCATTGATTACTTTAAAGGTGAT 13462 >seq9081 Length=2203 Score = 282 bits (312), Expect = 6e-71 Identities = 575/837 (69%), Gaps = 23/837 (3%) Strand=Plus/Plus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTC--TCGAAAAAATTAGTTTTGC 47892 ||||| ||||| | ||||||||||| || || |||| || || || ||||| |||| Sbjct 33 GACATGACTCCACTCTTTTGATATTCGCCAACC--TTTCGTTCAAAGAAGTTAGTCTTGC 90 Query 47893 CTTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAA 47952 | || | ||| || ||||||||| |||||||| | |||||| | || | || Sbjct 91 CCTCAAGTGAAATTAATTCCATAAATGAGAATGGATTTTTGGTATTATAGACCTTGTCAA 150 Query 47953 ATCCTAATTCTGA-AATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCA 48011 ||| ||||| ||| | | ||| || |||||||| || ||| ||| | ||| Sbjct 151 GTCCCAATTCGCCTAATAAATG-ATCGGCTACGAATTCAATGTATTCAGACATTAAATCA 209 Query 48012 CAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTG 48071 |||||||| || | | || ||||| || || || || | ||| || | ||| || | Sbjct 210 CAATTCATGCCCAACATCTTTACTGGAAGTGCGTCAGTCAAAAATTCCTTTTCAATCTTT 269 Query 48072 ACAGCATCCACTATTATCGATGTTACCGTTTCCT-CACTTGGTGGATAC--AACAA-ATG 48127 ||||| || | | || || | | | || | | ||||||| | | || || ||| Sbjct 270 ACAGCCTC---TGTGATA-ATTTCAACAACTCGTTCTTTTGGTGGCTTCTGAATAAGATG 325 Query 48128 TTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTT 48187 ||| ||||||| |||||||| |||| |||||| ||||| ||||| ||| | ||| || Sbjct 326 TTTGTACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATT 385 Query 48188 AGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGA 48247 || ||||| | ||| ||||||| |||||| || || | |||||| ||||| || || Sbjct 386 TGAGAATGTCAAACCTGGCATTAATCCACGCTTCTTAATCCAAAAGATTGCTGCAAAGCT 445 Query 48248 TCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGC 48307 |||| |||||| || || || || || ||||| || ||| || || || | | || Sbjct 446 TCCACTAAAGAAAATCCCCTCGACAGCAGCAAAGGCAATAACTCGTTCACCAAAGTTTGC 505 Query 48308 TTCGTTG-TG--TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGT 48364 | || || |||||| | ||||| || ||||| |||||||| || || | || Sbjct 506 ATGCTTACTGGATATCCAATTTAAGGCCCAGTCTGCCTTTTTCTTTACGCACGGTAAAGT 565 Query 48365 TTCTATAGCATTAAAGAGAAAGttttttt-CATTGCTATCTTTAACGTAAGTATCTATTA 48423 || |||||||| || | |||| | | |||| ||| | ||||| || |||| Sbjct 566 CTCAATAGCATTGAATAAGAAGTCACGCTGCTTTGC-ATCACGGATATAAGTTTCAATTA 624 Query 48424 AAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATC 48483 || ||||| || ||||| | |||||| || || || || ||||| ||||| ||| Sbjct 625 GAATCGAGTACATCTCTGAGTGTACATTTTCCATAGCAATTTGGAATCCATAAAAGAATC 684 Query 48484 TCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTC 48543 |||||||| | || || ||| || ||||||||| || ||||||||||| || | Sbjct 685 GAGCTTCTGTTACTTGAACTTCCTGACTGAATCGTTCAATTAAGTTCTCATTTACAATGC 744 Query 48544 CATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGA--AGT 48601 | || |||||||| ||||||||||| ||| ||||| | ||| || | | Sbjct 745 CGTCTGATGCAGCAAAGAATGCTAATACGTGTGAGATAAAGTGACGTTC--TGAATCCTT 802 Query 48602 CAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAA 48658 | ||| | ||||||| | ||||||||||||| ||| |||||||| ||||||| || Sbjct 803 TAATTTTTCCCAGTCACTCATATCTTTTGATAAATCGACTTCTTCGACTGTCCAGAA 859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694411103925280