Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq5596 535 6e-147 seq9081 268 1e-66 >seq5596 Length=16775 Score = 535 bits (592), Expect = 6e-147 Identities = 1127/1666 (68%), Gaps = 26/1666 (2%) Strand=Plus/Plus Query 75403 TTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCAT 75462 |||||| | || || ||||| |||||||| || |||| ||||||| || ||||| || Sbjct 11285 TTTTGTTCTTAAGTAATACATTCCAGTTTTAAGTCCCAACTTCCATCCATAAAAATGAAT 11344 Query 75463 GCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATC 75522 ||| | ||| |||| | || || |||| ||||||||| | || ||||||||||| Sbjct 11345 AGATGTCAATTTCCCATAATTTGGTTCCGCTACATGAATATTGAATGATTGACTTTGATC 11404 Query 75523 GATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAAT 75582 ||| |||||||| | |||||| ||||||| || ||||| || |||||||| | Sbjct 11405 GATAAAAGCTCCACGATCAGCTGCCATTTGAATTTGTGTCTTGACAGATATTTCCCATAC 11464 Query 75583 AGTTTTGAAAACTTGTTTGATATCATCTGGAA---GATTTGTATTTTGAATGGATCCGCC 75639 ||||| ||| | ||| |||||||| |||| || || ||| || || ||| Sbjct 11465 TGTTTTATAAATGTTTTTAATATCATCAGGAATTTCATCAATAGCTTGTATTGA---GCC 11521 Query 75640 ATCAGAT---ATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAAC 75696 || | | |||||| |||||| || ||||||| ||| || | || || ||| | Sbjct 11522 ATTATTTCCAATAATTTGATTCTTCATGTCATCATCCCATAAACCACGTTCTGTCAAATC 11581 Query 75697 TCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAAT 75756 ||| |||||| ||||||||| |||||| |||||| | || | ||| | |||| Sbjct 11582 CTTAATAAGATGATGATTAACAACTTGAAACTCTCCACTAAGCACACGACGATTATAAAC 11641 Query 75757 ATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGT 75816 |||||| || || ||||| | | ||||| || || ||||| ||||| ||||| ||||| Sbjct 11642 ATTACTTGTGTACGGTTCAAAACTCTCATTATTACCTAAAATCTGAGCTGTTGATGCAGT 11701 Query 75817 CGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAG 75876 ||||| ||||| | || || ||| | |||||| | ||||||| ||||||| Sbjct 11702 TGGCATTGGTGCTAATAACAATGAATTACGAAGACCAAAATTCTTGATTTTTTCTTTTAA 11761 Query 75877 ATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCC 75936 || ||||||||| | || | |||| ||||| | ||| ||||||| || || Sbjct 11762 TGCTTCCCAATCCCACAAGTCAGTTGGTGTCTTTTCCCACATATCATATTGTAATATACC 11821 Query 75937 -GTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGC 75995 ||| || | |||| | ||| || || ||||| || |||||||| | ||| | Sbjct 11822 TTTTGATA-CTGGACATCCTTCATACGTCTCATAAGTTCCAAGTTTTTCAGCCAATTCAC 11880 Query 75996 AACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCG 76055 | |||| |||||| || || ||||||||||| || || || | | ||| | || | Sbjct 11881 AGCTCGACTCTAAAGCTCCATAATAAATTGTCTCAAATATTTGTTGATTTAATAATTTAG 11940 Query 76056 CTTCA--AGACTATCAAAAGG-ATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAA 76112 ||||| |||| || | || || | | | ||||| ||||| |||| ||| |||| Sbjct 11941 CTTCATCAGAC--TCGTATGGCATTCT-CATCAATATAAAGGCATCAGCTAATCCTTGAA 11997 Query 76113 CTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAAT 76172 |||||| || || || | |||||| || || || ||||||| || || || Sbjct 11998 TTCCAATTCCGATTGGACGATGTCTAAAGTTTGATCGTTTAGCTTCTTCAACTGGATAGA 12057 Query 76173 AATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTT 76232 |||||| || ||||||||||| | |||||| |||| || || ||||| | || Sbjct 12058 AATTAACTTCAATAATTTTATTTAAATTTCTTGTGACTATCTTTGTGACTTCCTTCAATT 12117 Query 76233 TGAGAAAATCAAA---TTTTCCATCT---ATCACAAACATATTAAGAGCTATAGATGCTA 76286 | | |||||| | ||| | || | | ||||||||||| | || || ||||||| Sbjct 12118 TATGGAAATCATATTCTTTACGATTTGGCTTGACAAACATATTTAAGGCAATTGATGCTA 12177 Query 76287 GATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTAC 76346 |||||| || || || |||| | | | |||||| | || || || |||| ||| Sbjct 12178 AATTACAGACAGCAACTTCATCTTTACTTGAATATTGGACAATTTCAGTACATAAATTTG 12237 Query 76347 TACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTG-TTACATGAGTCCTTATAA 76405 || ||| ||||||||||| ||||| || | ||| | ||||||| |||||||| Sbjct 12238 AGCAACGGATTGTTCCAAGATTCTGTTGATT-CGATTTACGATTACATGCATCCTTATAC 12296 Query 76406 AGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTA 76465 || | | | || ||||| || |||| || ||||| ||||| | ||| | || Sbjct 12297 AGCATATAAGGTGTTCCTGTCTCAACTTGAGATTCAATAATTGCAAACCATAAATCTTGT 12356 Query 76466 GCTTTTATTATAGATTTGTATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAAT 76525 || |||| | | | |||| ||| ||||||| | |||||| ||||||| Sbjct 12357 GCCTTTACTTGACGAATAAATCGTCCTTCTGCTTCATATCGAATATATAGATTTTCAAAT 12416 Query 76526 TCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCA 76585 || | || || |||| | ||| ||||| || |||||||| || |||||| Sbjct 12417 TCTTTACCATAAGTCTCATAAAGACCTGGACAGCTATGAGGACACATTAAAGACCACATT 12476 Query 76586 CCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCT 76645 ||| | | ||| |||| |||||| | ||||| ||||||| |||| ||| | |||| Sbjct 12477 TCATTGTTTTCAACACGTTGCATAAACAAGTCAGGAATCCATAAAGCATAAAACATATCT 12536 Query 76646 CGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCA 76705 | | | | |||||| ||||| ||||| || || | |||||| ||||| | || ||| Sbjct 12537 CTAGCACGAACTTCTTCTTTTCCAGTATTTTTCTTTAAATCTAGAAACTCAAAAACATCT 12596 Query 76706 GAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCT 76765 |||||| ||||| | ||| | || | |||| || ||||||||||| || ||||| Sbjct 12597 CCATGCCAAGGTTCCAAATAGACTGCAAATGCACCAGGACGTTTATTACCACCTTGATCA 12656 Query 76766 ATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCA 76825 | ||| | || || ||||| |||||||||||||| || | | || || || | ||| Sbjct 12657 ACATAACGTGCTGTATTATTGTAAACTCTCAACATAGGTACGAGACCATTCGAAATCCCA 12716 Query 76826 TTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCT 76885 ||||| |||| ||||| | || || ||||||| | || | | ||| ||||| Sbjct 12717 TTTGTACCAGCTATATATGTCCCTTTTGAACGAATACAATGAACATTAACGCCAATTCCA 12776 Query 76886 CCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTA 76945 ||||| ||| ||||| || || | || || |||||||| || ||||| || Sbjct 12777 CCTGCTGATTTGCTAATTAGCGCGCATTGCTTTAAAGTGTCATAAATTCCCTCGATTGAG 12836 Query 76946 TCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTA 77005 ||||| ||| |||||||| || ||||| |||| || | || |||| Sbjct 12837 TCATCAGACATTGAGAGAAGAAAGCATGAAGACAATTGAGGACGTGGTGTAGCTGCTGCG 12896 Query 77006 AACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGAT 77051 || | ||| || |||||||| ||||| || | | ||||||| || Sbjct 12897 AAAAGTGTTGGTGATGCATGTGTGAAGAATCTAT-TGAAAGTAAAT 12941 Score = 170 bits (188), Expect = 3e-37 Identities = 324/470 (69%), Gaps = 14/470 (3%) Strand=Plus/Plus Query 77037 TTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTA 77096 ||||||| | ||||||||||| |||||| |||| || |||||| | |||||| || | Sbjct 12991 TTTCAGACAACAGATTGTATGTCTCAATAGCTGCATCAATATCCTCTCCATGAATACCAA 13050 Query 77097 CAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACA 77156 |||| || | ||| | |||||| || || |||||| || | || || || || |||| Sbjct 13051 CAGCAACTCTCATAAGCATATGTTGTGGACGTTCTGCAATTTTTCCCTTGATCTTTAACA 13110 Query 77157 AGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAA 77216 || | ||| || |||||||||||||||||||||||| || |||| || || | Sbjct 13111 GATAGCTTCGTTCTAAGGTTTTAAAACCAAAATAGTTGTATCCGAAATCTCGATCATAGA 13170 Query 77217 TAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATATCCATGACAGTGGTAG-AA 77275 | ||| | ||||| ||| || || ||| ||| || | |||| | | | | Sbjct 13171 TTATAGCTGAATTAAGTCGATCGGCATTTTTCATAATGATCT-TATGATGGAATTCGCTA 13229 Query 77276 ATAATTGGAGATCGTATTCCATTTTTAG-GATTAA-----CATAGTTAAATAAGTCTTCC 77329 || ||||| ||| || || ||||| ||| | |||| ||| | | || ||| Sbjct 13230 ATCATTGGGGAT-TTAGTC----TTTAGATATTCATTTTCCATA-TTATAAAGATCATCC 13283 Query 77330 ATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCA 77389 || || || ||||| |||| || || || ||||| || || || | ||| ||||| ||| Sbjct 13284 ATGACTTCACTAAACTGTTTCTTAGTCTCTTTGTGAAGGTTAGAAATGGCAATTCTTGCA 13343 Query 77390 GCTAGAATTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAA 77449 |||| || ||||| || | ||| | |||||| || |||||| |||| || |||||| Sbjct 13344 GCTAAAACAGCATAATCTGCATGATCTGTAGTCATCGTTGCTGCTGTTTCAGCTGCTAAA 13403 Query 77450 GTATCTAATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTT 77499 |||| | ||| || || ||||| |||| | ||| | || ||||| Sbjct 13404 TTATCCAGTTCCTGTGTTGTTACTCCTGTATACAACCCATTGATTACTTT 13453 >seq9081 Length=2203 Score = 268 bits (296), Expect = 1e-66 Identities = 576/848 (68%), Gaps = 45/848 (5%) Strand=Plus/Plus Query 46324 GACATAACTCCCATTTTTTGGTATTCACCTACACGTTTC--TCGAAAAAATTAGTTTTGC 46381 ||||| ||||| | ||||| ||||| || || |||| || || || ||||| |||| Sbjct 33 GACATGACTCCACTCTTTTGATATTCGCCAACC--TTTCGTTCAAAGAAGTTAGTCTTGC 90 Query 46382 CTTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAA 46441 | || | ||| || ||||||||| || ||||| | |||||| | || | || Sbjct 91 CCTCAAGTGAAATTAATTCCATAAATGAGAATGGATTTTTGGTATTATAGACCTTGTCAA 150 Query 46442 ATCCTAATTCTGA-AATCAGTCTATCTGCAACGAATTCTATATACGTTTTCAT-CATT-- 46497 ||| ||||| ||| | | ||| || |||||||| || || |||| |||| Sbjct 151 GTCCCAATTCGCCTAATAAATG-ATCGGCTACGAATTCAATGTA----TTCAGACATTAA 205 Query 46498 -TCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAAT 46556 ||||||||||| || | | || || || || || || || | ||| || | |||||| Sbjct 206 ATCACAATTCATGCCCAACATCTTTACTGGAAGTGCGTCAGTCAAAAATTCCTTTTCAAT 265 Query 46557 AGTGACAGCATCCG--ATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGC---ATC 46611 | ||||| || | ||| | || | ||| ||| | ||||||| | | || Sbjct 266 CTTTACAGCCTCTGTGATAATTTCAACA--ACTCGTTCTT---TTGGTGGCTTCTGAATA 320 Query 46612 AAATGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAAT 46671 | |||||| ||||||| |||||||| |||| |||||| ||||| ||||| ||| | | Sbjct 321 AGATGTTTGTACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGT 380 Query 46672 TCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCG 46731 || || || ||||| | || ||||||| ||||||||| || | |||||| || || || Sbjct 381 TCATTTGAGAATGTCAAACCTGGCATTAATCCACGCTTCTTAATCCAAAAGATTGCTGCA 440 Query 46732 AAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA 46791 || |||| |||||| || || || ||||| || || || | || || || || | Sbjct 441 AAGCTTCCACTAAAGAAAATCCCCTCGACAGCAGCAAAGGCAATAACTCGTTCACCAAAG 500 Query 46792 CTGGCATCATTAT--GA-ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGC 46848 | |||| ||| || ||||| || ||||| || |||||||||||||| || || Sbjct 501 TTTGCATGCTTACTGGATATCCAATTTAAGGCCCAGTCTGCCTTTTTCTTTACGCACGGT 560 Query 46849 ATTGTTTCTATAGCATTAAAGAGAAAGttt------ttttCATCACTATCTTTAACATAT 46902 | || || |||||||| || | |||| ||| |||||| | ||| Sbjct 561 AAAGTCTCAATAGCATTGAATAAGAAGTCACGCTGCTTTGCATCACGG------ATATAA 614 Query 46903 GTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCG 46962 || || |||| || ||||| ||||| || | ||||| ||||| || || ||||| Sbjct 615 GTTTCAATTAGAATCGAGTACATCTCTGAGTGTACATTTTCCATAGCAATTTGGAATCCA 674 Query 46963 TAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCA 47022 ||||| ||| ||||| || | || || || || ||||||||| || |||||| Sbjct 675 TAAAAGAATCGAGCTTCTGTTACTTGAACTTCCTGACTGAATCGTTCAATTAAGTTCTCA 734 Query 47023 TTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTC- 47081 || || || || || |||||||| ||||| ||||| ||| ||||| | ||| Sbjct 735 TTTACAATGCCGTCTGATGCAGCAAAGAATGCTAATACGTGTGAGATAAAGTGACGTTCT 794 Query 47082 --ATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCT 47139 ||| | | ||| | ||||||| | ||||||||||||| ||| |||||||| || Sbjct 795 GAATCCTTT---AATTTTTCCCAGTCACTCATATCTTTTGATAAATCGACTTCTTCGACT 851 Query 47140 GTCCAGAA 47147 |||||||| Sbjct 852 GTCCAGAA 859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712669928072640