Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq5596 535 6e-147
seq9081 268 1e-66
>seq5596
Length=16775
Score = 535 bits (592), Expect = 6e-147
Identities = 1127/1666 (68%), Gaps = 26/1666 (2%)
Strand=Plus/Plus
Query 75403 TTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCAT 75462
|||||| | || || ||||| |||||||| || |||| ||||||| || ||||| ||
Sbjct 11285 TTTTGTTCTTAAGTAATACATTCCAGTTTTAAGTCCCAACTTCCATCCATAAAAATGAAT 11344
Query 75463 GCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATC 75522
||| | ||| |||| | || || |||| ||||||||| | || |||||||||||
Sbjct 11345 AGATGTCAATTTCCCATAATTTGGTTCCGCTACATGAATATTGAATGATTGACTTTGATC 11404
Query 75523 GATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAAT 75582
||| |||||||| | |||||| ||||||| || ||||| || |||||||| |
Sbjct 11405 GATAAAAGCTCCACGATCAGCTGCCATTTGAATTTGTGTCTTGACAGATATTTCCCATAC 11464
Query 75583 AGTTTTGAAAACTTGTTTGATATCATCTGGAA---GATTTGTATTTTGAATGGATCCGCC 75639
||||| ||| | ||| |||||||| |||| || || ||| || || |||
Sbjct 11465 TGTTTTATAAATGTTTTTAATATCATCAGGAATTTCATCAATAGCTTGTATTGA---GCC 11521
Query 75640 ATCAGAT---ATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAAC 75696
|| | | |||||| |||||| || ||||||| ||| || | || || ||| |
Sbjct 11522 ATTATTTCCAATAATTTGATTCTTCATGTCATCATCCCATAAACCACGTTCTGTCAAATC 11581
Query 75697 TCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAAT 75756
||| |||||| ||||||||| |||||| |||||| | || | ||| | ||||
Sbjct 11582 CTTAATAAGATGATGATTAACAACTTGAAACTCTCCACTAAGCACACGACGATTATAAAC 11641
Query 75757 ATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGT 75816
|||||| || || ||||| | | ||||| || || ||||| ||||| ||||| |||||
Sbjct 11642 ATTACTTGTGTACGGTTCAAAACTCTCATTATTACCTAAAATCTGAGCTGTTGATGCAGT 11701
Query 75817 CGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAG 75876
||||| ||||| | || || ||| | |||||| | ||||||| |||||||
Sbjct 11702 TGGCATTGGTGCTAATAACAATGAATTACGAAGACCAAAATTCTTGATTTTTTCTTTTAA 11761
Query 75877 ATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCC 75936
|| ||||||||| | || | |||| ||||| | ||| ||||||| || ||
Sbjct 11762 TGCTTCCCAATCCCACAAGTCAGTTGGTGTCTTTTCCCACATATCATATTGTAATATACC 11821
Query 75937 -GTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGC 75995
||| || | |||| | ||| || || ||||| || |||||||| | ||| |
Sbjct 11822 TTTTGATA-CTGGACATCCTTCATACGTCTCATAAGTTCCAAGTTTTTCAGCCAATTCAC 11880
Query 75996 AACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCG 76055
| |||| |||||| || || ||||||||||| || || || | | ||| | || |
Sbjct 11881 AGCTCGACTCTAAAGCTCCATAATAAATTGTCTCAAATATTTGTTGATTTAATAATTTAG 11940
Query 76056 CTTCA--AGACTATCAAAAGG-ATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAA 76112
||||| |||| || | || || | | | ||||| ||||| |||| ||| ||||
Sbjct 11941 CTTCATCAGAC--TCGTATGGCATTCT-CATCAATATAAAGGCATCAGCTAATCCTTGAA 11997
Query 76113 CTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAAT 76172
|||||| || || || | |||||| || || || ||||||| || || ||
Sbjct 11998 TTCCAATTCCGATTGGACGATGTCTAAAGTTTGATCGTTTAGCTTCTTCAACTGGATAGA 12057
Query 76173 AATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTT 76232
|||||| || ||||||||||| | |||||| |||| || || ||||| | ||
Sbjct 12058 AATTAACTTCAATAATTTTATTTAAATTTCTTGTGACTATCTTTGTGACTTCCTTCAATT 12117
Query 76233 TGAGAAAATCAAA---TTTTCCATCT---ATCACAAACATATTAAGAGCTATAGATGCTA 76286
| | |||||| | ||| | || | | ||||||||||| | || || |||||||
Sbjct 12118 TATGGAAATCATATTCTTTACGATTTGGCTTGACAAACATATTTAAGGCAATTGATGCTA 12177
Query 76287 GATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTAC 76346
|||||| || || || |||| | | | |||||| | || || || |||| |||
Sbjct 12178 AATTACAGACAGCAACTTCATCTTTACTTGAATATTGGACAATTTCAGTACATAAATTTG 12237
Query 76347 TACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTG-TTACATGAGTCCTTATAA 76405
|| ||| ||||||||||| ||||| || | ||| | ||||||| ||||||||
Sbjct 12238 AGCAACGGATTGTTCCAAGATTCTGTTGATT-CGATTTACGATTACATGCATCCTTATAC 12296
Query 76406 AGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTA 76465
|| | | | || ||||| || |||| || ||||| ||||| | ||| | ||
Sbjct 12297 AGCATATAAGGTGTTCCTGTCTCAACTTGAGATTCAATAATTGCAAACCATAAATCTTGT 12356
Query 76466 GCTTTTATTATAGATTTGTATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAAT 76525
|| |||| | | | |||| ||| ||||||| | |||||| |||||||
Sbjct 12357 GCCTTTACTTGACGAATAAATCGTCCTTCTGCTTCATATCGAATATATAGATTTTCAAAT 12416
Query 76526 TCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCA 76585
|| | || || |||| | ||| ||||| || |||||||| || ||||||
Sbjct 12417 TCTTTACCATAAGTCTCATAAAGACCTGGACAGCTATGAGGACACATTAAAGACCACATT 12476
Query 76586 CCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCT 76645
||| | | ||| |||| |||||| | ||||| ||||||| |||| ||| | ||||
Sbjct 12477 TCATTGTTTTCAACACGTTGCATAAACAAGTCAGGAATCCATAAAGCATAAAACATATCT 12536
Query 76646 CGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCA 76705
| | | | |||||| ||||| ||||| || || | |||||| ||||| | || |||
Sbjct 12537 CTAGCACGAACTTCTTCTTTTCCAGTATTTTTCTTTAAATCTAGAAACTCAAAAACATCT 12596
Query 76706 GAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCT 76765
|||||| ||||| | ||| | || | |||| || ||||||||||| || |||||
Sbjct 12597 CCATGCCAAGGTTCCAAATAGACTGCAAATGCACCAGGACGTTTATTACCACCTTGATCA 12656
Query 76766 ATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCA 76825
| ||| | || || ||||| |||||||||||||| || | | || || || | |||
Sbjct 12657 ACATAACGTGCTGTATTATTGTAAACTCTCAACATAGGTACGAGACCATTCGAAATCCCA 12716
Query 76826 TTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCT 76885
||||| |||| ||||| | || || ||||||| | || | | ||| |||||
Sbjct 12717 TTTGTACCAGCTATATATGTCCCTTTTGAACGAATACAATGAACATTAACGCCAATTCCA 12776
Query 76886 CCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTA 76945
||||| ||| ||||| || || | || || |||||||| || ||||| ||
Sbjct 12777 CCTGCTGATTTGCTAATTAGCGCGCATTGCTTTAAAGTGTCATAAATTCCCTCGATTGAG 12836
Query 76946 TCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTA 77005
||||| ||| |||||||| || ||||| |||| || | || ||||
Sbjct 12837 TCATCAGACATTGAGAGAAGAAAGCATGAAGACAATTGAGGACGTGGTGTAGCTGCTGCG 12896
Query 77006 AACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGAT 77051
|| | ||| || |||||||| ||||| || | | ||||||| ||
Sbjct 12897 AAAAGTGTTGGTGATGCATGTGTGAAGAATCTAT-TGAAAGTAAAT 12941
Score = 170 bits (188), Expect = 3e-37
Identities = 324/470 (69%), Gaps = 14/470 (3%)
Strand=Plus/Plus
Query 77037 TTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTA 77096
||||||| | ||||||||||| |||||| |||| || |||||| | |||||| || |
Sbjct 12991 TTTCAGACAACAGATTGTATGTCTCAATAGCTGCATCAATATCCTCTCCATGAATACCAA 13050
Query 77097 CAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACA 77156
|||| || | ||| | |||||| || || |||||| || | || || || || ||||
Sbjct 13051 CAGCAACTCTCATAAGCATATGTTGTGGACGTTCTGCAATTTTTCCCTTGATCTTTAACA 13110
Query 77157 AGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAA 77216
|| | ||| || |||||||||||||||||||||||| || |||| || || |
Sbjct 13111 GATAGCTTCGTTCTAAGGTTTTAAAACCAAAATAGTTGTATCCGAAATCTCGATCATAGA 13170
Query 77217 TAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATATCCATGACAGTGGTAG-AA 77275
| ||| | ||||| ||| || || ||| ||| || | |||| | | | |
Sbjct 13171 TTATAGCTGAATTAAGTCGATCGGCATTTTTCATAATGATCT-TATGATGGAATTCGCTA 13229
Query 77276 ATAATTGGAGATCGTATTCCATTTTTAG-GATTAA-----CATAGTTAAATAAGTCTTCC 77329
|| ||||| ||| || || ||||| ||| | |||| ||| | | || |||
Sbjct 13230 ATCATTGGGGAT-TTAGTC----TTTAGATATTCATTTTCCATA-TTATAAAGATCATCC 13283
Query 77330 ATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCA 77389
|| || || ||||| |||| || || || ||||| || || || | ||| ||||| |||
Sbjct 13284 ATGACTTCACTAAACTGTTTCTTAGTCTCTTTGTGAAGGTTAGAAATGGCAATTCTTGCA 13343
Query 77390 GCTAGAATTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAA 77449
|||| || ||||| || | ||| | |||||| || |||||| |||| || ||||||
Sbjct 13344 GCTAAAACAGCATAATCTGCATGATCTGTAGTCATCGTTGCTGCTGTTTCAGCTGCTAAA 13403
Query 77450 GTATCTAATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTT 77499
|||| | ||| || || ||||| |||| | ||| | || |||||
Sbjct 13404 TTATCCAGTTCCTGTGTTGTTACTCCTGTATACAACCCATTGATTACTTT 13453
>seq9081
Length=2203
Score = 268 bits (296), Expect = 1e-66
Identities = 576/848 (68%), Gaps = 45/848 (5%)
Strand=Plus/Plus
Query 46324 GACATAACTCCCATTTTTTGGTATTCACCTACACGTTTC--TCGAAAAAATTAGTTTTGC 46381
||||| ||||| | ||||| ||||| || || |||| || || || ||||| ||||
Sbjct 33 GACATGACTCCACTCTTTTGATATTCGCCAACC--TTTCGTTCAAAGAAGTTAGTCTTGC 90
Query 46382 CTTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAA 46441
| || | ||| || ||||||||| || ||||| | |||||| | || | ||
Sbjct 91 CCTCAAGTGAAATTAATTCCATAAATGAGAATGGATTTTTGGTATTATAGACCTTGTCAA 150
Query 46442 ATCCTAATTCTGA-AATCAGTCTATCTGCAACGAATTCTATATACGTTTTCAT-CATT-- 46497
||| ||||| ||| | | ||| || |||||||| || || |||| ||||
Sbjct 151 GTCCCAATTCGCCTAATAAATG-ATCGGCTACGAATTCAATGTA----TTCAGACATTAA 205
Query 46498 -TCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAAT 46556
||||||||||| || | | || || || || || || || | ||| || | ||||||
Sbjct 206 ATCACAATTCATGCCCAACATCTTTACTGGAAGTGCGTCAGTCAAAAATTCCTTTTCAAT 265
Query 46557 AGTGACAGCATCCG--ATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGC---ATC 46611
| ||||| || | ||| | || | ||| ||| | ||||||| | | ||
Sbjct 266 CTTTACAGCCTCTGTGATAATTTCAACA--ACTCGTTCTT---TTGGTGGCTTCTGAATA 320
Query 46612 AAATGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAAT 46671
| |||||| ||||||| |||||||| |||| |||||| ||||| ||||| ||| | |
Sbjct 321 AGATGTTTGTACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGT 380
Query 46672 TCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCG 46731
|| || || ||||| | || ||||||| ||||||||| || | |||||| || || ||
Sbjct 381 TCATTTGAGAATGTCAAACCTGGCATTAATCCACGCTTCTTAATCCAAAAGATTGCTGCA 440
Query 46732 AAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA 46791
|| |||| |||||| || || || ||||| || || || | || || || || |
Sbjct 441 AAGCTTCCACTAAAGAAAATCCCCTCGACAGCAGCAAAGGCAATAACTCGTTCACCAAAG 500
Query 46792 CTGGCATCATTAT--GA-ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGC 46848
| |||| ||| || ||||| || ||||| || |||||||||||||| || ||
Sbjct 501 TTTGCATGCTTACTGGATATCCAATTTAAGGCCCAGTCTGCCTTTTTCTTTACGCACGGT 560
Query 46849 ATTGTTTCTATAGCATTAAAGAGAAAGttt------ttttCATCACTATCTTTAACATAT 46902
| || || |||||||| || | |||| ||| |||||| | |||
Sbjct 561 AAAGTCTCAATAGCATTGAATAAGAAGTCACGCTGCTTTGCATCACGG------ATATAA 614
Query 46903 GTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCG 46962
|| || |||| || ||||| ||||| || | ||||| ||||| || || |||||
Sbjct 615 GTTTCAATTAGAATCGAGTACATCTCTGAGTGTACATTTTCCATAGCAATTTGGAATCCA 674
Query 46963 TAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCA 47022
||||| ||| ||||| || | || || || || ||||||||| || ||||||
Sbjct 675 TAAAAGAATCGAGCTTCTGTTACTTGAACTTCCTGACTGAATCGTTCAATTAAGTTCTCA 734
Query 47023 TTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTC- 47081
|| || || || || |||||||| ||||| ||||| ||| ||||| | |||
Sbjct 735 TTTACAATGCCGTCTGATGCAGCAAAGAATGCTAATACGTGTGAGATAAAGTGACGTTCT 794
Query 47082 --ATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCT 47139
||| | | ||| | ||||||| | ||||||||||||| ||| |||||||| ||
Sbjct 795 GAATCCTTT---AATTTTTCCCAGTCACTCATATCTTTTGATAAATCGACTTCTTCGACT 851
Query 47140 GTCCAGAA 47147
||||||||
Sbjct 852 GTCCAGAA 859
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712669928072640
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