Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_031065.1 Length=159878 Score E Sequences producing significant alignments: (Bits) Value seq7918 141 1e-28 >seq7918 Length=32631 Score = 141 bits (156), Expect = 1e-28 Identities = 271/398 (68%), Gaps = 6/398 (2%) Strand=Plus/Plus Query 132595 CCATAATCTAGATGACGAATACGGTTTTCATCTACACCTTTGTTGTTCTTTAATACAAGC 132654 |||||||| ||||| || | || ||||| || || || ||||| ||||| || | | Sbjct 18054 CCATAATCCAGATGGCGTACCCGATTTTCCTCAACGCCCCGATTGTTTTTTAACACTAAC 18113 Query 132655 AGGTTTTCAACTTCTAGATGCCACATTGGATAATAAAGAGTAGCTGCACCACCACGTACA 132714 ||| ||| ||||| ||||||| | ||||| | || ||||| || || || || ||| Sbjct 18114 AGGGCTTCTACTTCGCGATGCCATAGCGGATAGAAGAGGGTAGCGGCTCCCCCGCGCACA 18173 Query 132715 CCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATGTTTCCAAAAAGGAATTACGCCA 132774 |||||||| || || ||||| || || || || |||||||| |||||||||| ||| Sbjct 18174 CCGCCTTGGGAGCACGATTTGACGGCTGTTTGGAAATGTTTGTAAAAAGGAATACAGCCG 18233 Query 132775 GTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTCAGCTCGAATCATACCGGCGTTG 132834 ||||| | || || | ||| |||| || || ||| | ||||| || Sbjct 18234 GTATGAAAGGCCTCACCGCCGCGAATGGGGCTGCCTAAGGCGCGGATCTTGCCGGCATTA 18293 Query 132835 ATGCCTATACCAGCTCGCTTGCTGATATACTTAATAATACTGTTACTTGC---CGCATTA 132891 || || ||||| || || | || || || | || || ||| || ||||| Sbjct 18294 ATCCCAATACCGGCACGTTGAGAGACGTATTTCACAA---TGGCACTGGCGGTGGCATTG 18350 Query 132892 ATAGAATTCAGTGAATCGCCAGCTTCGATAACTACACAAGAACTAAATTGACGAGTAGGA 132951 || || | | ||| || ||||| | |||||||| ||||||||||| || || Sbjct 18351 ATGGAGTCTAAACTATCTGCACACTCGATTAACACACAAGAGCTAAATTGACGGGTTGGG 18410 Query 132952 GTACGAGCCCCCGCCATAATTGGTGTAGGTAATGAAAT 132989 |||||| | ||||||||||| || ||||| | ||||| Sbjct 18411 GTACGAACACCCGCCATAATCGGAGTAGGCAGCGAAAT 18448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511291859506960