Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_031087.1 Length=168272 Score E Sequences producing significant alignments: (Bits) Value seq7918 163 3e-35 >seq7918 Length=32631 Score = 163 bits (180), Expect = 3e-35 Identities = 292/425 (69%), Gaps = 1/425 (0%) Strand=Plus/Plus Query 141248 CAGGTTATTAATCTGAACGCCATAATCTAAATGACGAATACGGTTTTCATCTACACCTTT 141307 ||| || || | ||| || |||||||| | ||| || | || ||||| || || || Sbjct 18035 CAGTTTGTTCAGCTGTACCCCATAATCCAGATGGCGTACCCGATTTTCCTCAACGCCCCG 18094 Query 141308 GTTGTTCTTAAGTACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAGTGT 141367 ||||| || | || | ||| ||| ||||| ||||| | |||||| | || || Sbjct 18095 ATTGTTTTTTAACACTAACAGGGCTTCTACTTCGCGATGCCATAGCGGATAGAAGAGGGT 18154 Query 141368 CGCCGCGCCACCACGGACTCCACCTTGGGAGCAGGATTTAACTGCTGTTTGGAAGTGTTT 141427 || || || || || || || ||||||||||| ||||| || ||||||||||| ||||| Sbjct 18155 AGCGGCTCCCCCGCGCACACCGCCTTGGGAGCACGATTTGACGGCTGTTTGGAAATGTTT 18214 Query 141428 CCAGAAAGGAATAACTCCAGTATGTTTGACTTCACCGAATCCAATTTTTGAACCCTCGGC 141487 | ||||||||| || ||||| | | |||||| | ||| || ||| Sbjct 18215 GTAAAAAGGAATACAGCCGGTATGAAAGGCCTCACCGCCGCGAATGGGGCTGCCTAAGGC 18274 Query 141488 GCGAATCATGCCTGCATTAATACCAATACCTGCACGCTTACTGATGTATTTCGTAATTGA 141547 ||| ||| |||| |||||||| |||||||| ||||| | | || ||||||| ||| | Sbjct 18275 GCGGATCTTGCCGGCATTAATCCCAATACCGGCACGTTGAGAGACGTATTTCACAATGGC 18334 Query 141548 TGCAGCAGCTTCGTTAATTGAATTAAGACTATCACCACCTTCAATAACCACGCATGAACT 141607 || | | || || || | | |||||| ||| || || | ||| || || || Sbjct 18335 ACTGGCGGTGGCATTGATGGAGTCTAAACTATCTGCACACTCGATTAACACACAAGAGCT 18394 Query 141608 GAACTGGCGTGTCGGAGTACGAACACCAGACATAATTGGTGTTGGCAATGAAATCTTTTT 141667 || || || || || ||||||||||| | |||||| || || |||| ||||| ||| | Sbjct 18395 AAATTGACGGGTTGGGGTACGAACACCCGCCATAATCGGAGTAGGCAGCGAAAT-TTTAT 18453 Query 141668 AGTAG 141672 || || Sbjct 18454 AGCAG 18458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538142695157440