Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_031095.1 Length=168758 Score E Sequences producing significant alignments: (Bits) Value seq7918 163 3e-35 >seq7918 Length=32631 Score = 163 bits (180), Expect = 3e-35 Identities = 292/425 (69%), Gaps = 1/425 (0%) Strand=Plus/Minus Query 136374 CTACTAAAAAGATTTCATTGCCAACACCAATTATGTCTGGTGTTCGTACTCCAACCCGCC 136433 || ||| ||| ||||| |||| || || |||||| | ||||||||||| |||||||| | Sbjct 18458 CTGCTATAAA-ATTTCGCTGCCTACTCCGATTATGGCGGGTGTTCGTACCCCAACCCGTC 18400 Query 136434 AGTTCAGTTCATGCGTAGTTATTGAAGGTGGTGATAGTCTTAATTCAATTAACGAAGCCG 136493 | || || || || || | || || ||| |||||| | | || || || | ||| Sbjct 18399 AATTTAGCTCTTGTGTGTTAATCGAGTGTGCAGATAGTTTAGACTCCATCAATGCCACCG 18340 Query 136494 CTGCATCAATTACGAAATACATTAGTAAGCGTGCTGGTATTGGTATTAATGCGGGGATGA 136553 | | ||| ||||||| | | | ||||| |||||||| |||||||| || | || Sbjct 18339 CCAGTGCCATTGTGAAATACGTCTCTCAACGTGCCGGTATTGGGATTAATGCCGGCAAGA 18280 Query 136554 TTCGTGCAGAAGGATCAAAAATTGGATTCGGTGAAGTCAAGCATACTGGTGTTATTCCTT 136613 | || || ||| ||| | |||||| | | ||||| || |||||||| Sbjct 18279 TCCGCGCCTTAGGCAGCCCCATTCGCGGCGGTGAGGCCTTTCATACCGGCTGTATTCCTT 18220 Query 136614 TCTGGAAACACTTCCAAACCGCAGTTAAGTCATGCTCCCAAGGCGGAGTCCGTGGTGGTG 136673 | | ||||| |||||||| || || || || |||||||||||||| || || || || | Sbjct 18219 TTTACAAACATTTCCAAACAGCCGTCAAATCGTGCTCCCAAGGCGGTGTGCGCGGGGGAG 18160 Query 136674 CAGCTACACTGTATTATCCGATGTGGCACTTGGAAGTTGAAAACCTCCTCGTACTTAAGA 136733 | ||||| || | |||||| | ||||| ||||| ||| ||| | || | || | Sbjct 18159 CCGCTACCCTCTTCTATCCGCTATGGCATCGCGAAGTAGAAGCCCTGTTAGTGTTAAAAA 18100 Query 136734 ACAACAAAGGTGTAGATGAAAACCGTATTCGCCATTTAGATTATGGTGTTCAGATTAATA 136793 |||| || || || ||||| || | |||||| | |||||||| || ||| | || | Sbjct 18099 ACAATCGGGGCGTTGAGGAAAATCGGGTACGCCATCTGGATTATGGGGTACAGCTGAACA 18040 Query 136794 ACCTG 136798 | ||| Sbjct 18039 AACTG 18035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539697318236560