Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_031103.1 Length=165772 Score E Sequences producing significant alignments: (Bits) Value seq7918 107 2e-18 >seq7918 Length=32631 Score = 107 bits (118), Expect = 2e-18 Identities = 273/413 (66%), Gaps = 12/413 (3%) Strand=Plus/Plus Query 138410 TTCAGTTGAACGCCATAATCCATATGACGAATACGGTTTTCTTCTACGCCTTTGTTATTT 138469 ||||| || || |||||||||| ||| || | || ||||| || ||||| || ||| Sbjct 18042 TTCAGCTGTACCCCATAATCCAGATGGCGTACCCGATTTTCCTCAACGCCCCGATTGTTT 18101 Query 138470 TTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCG 138529 || || || | || ||| ||||| |||||| | ||||| | ||||| || Sbjct 18102 TTTAACACTAACAGGGCTTCTACTTCGCGATGCCATAGCGGATAGAAGAGGGTAGCGGCT 18161 Query 138530 CCGCCACGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAA 138589 || || || | || || || ||||| ||||| || || || || |||||||| ||||| Sbjct 18162 CCCCCGCGCACACCGCCTTGGGAGCACGATTTGACGGCTGTTTGGAAATGTTTGTAAAAA 18221 Query 138590 GGAATAACACCAGTATGACGTACTTCACCTGTACCAATCTTAGAACCTTCGGCACGAATC 138649 |||||| || |||||| | ||||| | ||| ||| ||| || ||| Sbjct 18222 GGAATACAGCCGGTATGAAAGGCCTCACCGCCGCGAATGGGGCTGCCTAAGGCGCGGATC 18281 Query 138650 ATACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAATTGAA---GCA 138706 | || | ||||| ||||| || || |||| |||| |||| ||||| | | || Sbjct 18282 TTGCCGGCATTAATCCCAATACCGGCACGTTGAGAGACGTATTTCACAATGGCACTGGCG 18341 Query 138707 GAAGCTTTGTTAATAGACTTCAGCGAATCACCTGC---TTCAATAACAACGCATGAACTA 138763 | || ||| || || | | || | |||| || || | || || || ||| Sbjct 18342 GTGGCATTG---ATGGAGTCTA---AACTATCTGCACACTCGATTAACACACAAGAGCTA 18395 Query 138764 AACTGCCGAGTTGGAGTACGACAACCAGCCATAATAGGAGTTGGTAATGAAAT 138816 || || || ||||| |||||| ||| |||||||| ||||| || | ||||| Sbjct 18396 AATTGACGGGTTGGGGTACGAACACCCGCCATAATCGGAGTAGGCAGCGAAAT 18448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530145662857440