Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq15550 107 3e-18 >seq15550 Length=6095 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 201842 AAAGCCGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAAC 201901 ||| | || ||||| || ||| || |||||| | ||||| |||||||||||||||| Sbjct 2862 AAACCAGATCGTACTGGGGTGGGAACGCTCTCTATCTTCGGCTACCAGATGCGCTTTAAC 2803 Query 201902 TTACAAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCAT 201961 || ||||| || ||||| |||||||||||||| | || || |||||||| || || Sbjct 2802 TTGCAAGAGGGCTTTCCATTGGTCACCACCAAACGGTGCCATCTACGTTCAATTATTTAT 2743 Query 201962 GAGCTGCTGTGGTT 201975 || ||||||||||| Sbjct 2742 GAACTGCTGTGGTT 2729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787710880362920