Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq15550 87.8 3e-12 >seq15550 Length=6095 Score = 87.8 bits (96), Expect = 3e-12 Identities = 174/258 (67%), Gaps = 10/258 (4%) Strand=Plus/Minus Query 196065 AAAGCTGACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGAC 196124 ||| | || ||||| || ||| || ||||||| ||||| || |||||||| ||| || Sbjct 2862 AAACCAGATCGTACTGGGGTGGGAACGCTCTCTATCTTCGGCTACCAGATGCGCTTTAAC 2803 Query 196125 CTGCGCAAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCAC 196184 ||| | || || || |||||||||||||| || || || || || || || | Sbjct 2802 TTGCAAGAGGGCTTTCCATTGGTCACCACCAAACGGTGCCATCTACGTTCAATTATTTAT 2743 Query 196185 GAACTGTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAAC--- 196241 |||||| ||||||| | | || |||| | || |||| |||||||| Sbjct 2742 GAACTGCTGTGGTTTTTACAGGGGAGCACC-----CAGGTGGCTGATCTACAACAACATC 2688 Query 196242 --GTCAGTATCTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTA 196299 |||| || ||||||| ||||| || | | || || | || || |||| || | Sbjct 2687 AGATCAGCATTTGGGATGCTTGGGCTGACGCTCAAGGTGAATTGGGGCCGATCTATGGCA 2628 Query 196300 AGCAGTGGCGTGCATGGG 196317 | ||||||||||| |||| Sbjct 2627 AACAGTGGCGTGCCTGGG 2610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770021444915320