Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_031127.1
Length=240761
Score E
Sequences producing significant alignments: (Bits) Value
seq15550 87.8 3e-12
>seq15550
Length=6095
Score = 87.8 bits (96), Expect = 3e-12
Identities = 174/258 (67%), Gaps = 10/258 (4%)
Strand=Plus/Minus
Query 196065 AAAGCTGACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGAC 196124
||| | || ||||| || ||| || ||||||| ||||| || |||||||| ||| ||
Sbjct 2862 AAACCAGATCGTACTGGGGTGGGAACGCTCTCTATCTTCGGCTACCAGATGCGCTTTAAC 2803
Query 196125 CTGCGCAAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCAC 196184
||| | || || || |||||||||||||| || || || || || || || |
Sbjct 2802 TTGCAAGAGGGCTTTCCATTGGTCACCACCAAACGGTGCCATCTACGTTCAATTATTTAT 2743
Query 196185 GAACTGTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAAC--- 196241
|||||| ||||||| | | || |||| | || |||| ||||||||
Sbjct 2742 GAACTGCTGTGGTTTTTACAGGGGAGCACC-----CAGGTGGCTGATCTACAACAACATC 2688
Query 196242 --GTCAGTATCTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTA 196299
|||| || ||||||| ||||| || | | || || | || || |||| || |
Sbjct 2687 AGATCAGCATTTGGGATGCTTGGGCTGACGCTCAAGGTGAATTGGGGCCGATCTATGGCA 2628
Query 196300 AGCAGTGGCGTGCATGGG 196317
| ||||||||||| ||||
Sbjct 2627 AACAGTGGCGTGCCTGGG 2610
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 770021444915320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |