Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq25260 141 6e-29 seq6010 140 2e-28 seq25273 118 7e-22 seq7409 111 1e-19 seq11528 89.7 3e-13 >seq25260 Length=1984 Score = 141 bits (156), Expect = 6e-29 Identities = 145/188 (77%), Gaps = 1/188 (1%) Strand=Plus/Plus Query 38229 TGACATCCTCCACGCCCTTCGGGGTGTGGATTCCTGCTATG-TTCAGGCTGTCGCCTGAA 38287 |||||||||| |||||| ||| | ||||||| || | |||| ||| ||||||| Sbjct 1677 TGACATCCTCACCGCCCTAAAGGGCGATGATTCCTACTGCGGTTCAAGCTTGCGCCTGAC 1736 Query 38288 TCATTTCGGAGGGTTCCTGCTTCAACGGGCGGTCTGACTGCACCATCCCTCCACAGGCAA 38347 ||| ||||| |||||||||||||| || | || |||||||| || || |||||||||| | Sbjct 1737 TCACTTCGGCGGGTTCCTGCTTCATCGAGAGGCCTGACTGCGCCGTCTCTCCACAGGCTA 1796 Query 38348 GCACGGCGTGCCCCGCCGCTAAAATGTTACGAGCGCCGTTTACATCGGCGTTCGCTGTAT 38407 |||| | ||||| |||||||| || || || | |||| ||| |||||| |||||| Sbjct 1797 ACACGACATGCCCTGCCGCTAATATATTCATGGCAGCATTTAAATCAGCGTTCTCTGTAT 1856 Query 38408 ATCCACAA 38415 | |||||| Sbjct 1857 AGCCACAA 1864 >seq6010 Length=9096 Score = 140 bits (154), Expect = 2e-28 Identities = 524/817 (64%), Gaps = 20/817 (2%) Strand=Plus/Minus Query 96864 CAATTGCTCCTGATTCACGTAAATCTGAATTTACCGGTCGTTTGTCCGCACGCTGTTCAA 96923 |||| | || || || || ||||| || || | ||| || || || | ||||| || | Sbjct 4697 CAATCGAGCCAGACTCCCGCAAATCCGAGTTCAGCGGCCGCTTTTCTGATCGCTGCTCTA 4638 Query 96924 GCGATCGATTAAGTTGTGACAATGCCACCACCGGTACTTGTAATTCCTTCGCCAACGCCT 96983 | || || | || || || || | |||||| || ||||| ||||| || || || | Sbjct 4637 GACTCCGGTTTAACTGGGATAAAGCGATCACCGGGACCTGTAACTCCTTAGCTAAGGCTT 4578 Query 96984 TCAGTGAGCGAGAAATCTCGGCAATTTCCAGCGTTCGGTTATCTTGCAGCTCCGGGACGC 97043 |||| || || ||||| || ||||| || | || || || || | || | || | | Sbjct 4577 TCAGGGATCGTGAAATTTCAGCAATCTCTTGGGTACGATTTTCAGACTGCCCTGGCGCAC 4518 Query 97044 GCATAAGTTGCAGGTAGTCGATCATAATCATGCTCAAACCACCATTTTCTTTATAAACAC 97103 |||| | || | ||||| | ||| |||| || || || || | ||| | | | | Sbjct 4517 GCATCAACTGTAAATAGTCAACCATGATCAGACTTAATCCCCCCTGCTCTCGAAACAGTC 4458 Query 97104 GACGAGCGCGGGAACGTAGCTCTGTCGGCGTCAGGGCGCTTGAGTCATCAATAAAAATAT 97163 | || || || | ||| || || || || || | | ||| ||||||||| | | | Sbjct 4457 GCCGCGCTCGAGCACGGAGATCAGTGGGGGTTAAACTGGCTGAATCATCAATATAGAGGT 4398 Query 97164 TCTGCTTGTCCAACAGAATACCCATTGCGCCAGAAACCCGCGCCCAATCCTCGTCGTTAA 97223 | || |||| || | |||||| | | | ||||||||||| || || | | Sbjct 4397 TACATTTCTCCATCAATAAACCCATGCTACTGGTGATTCGCGCCCAATCTTCATCATCCA 4338 Query 97224 GTTGCCCTGTTCGAATACGAGTCTGATCAACGCGTGCAAGAGAAGCCAGTGAG----CGC 97279 |||| || || ||||| || || ||||||| | | |||| | || ||| ||| Sbjct 4337 GTTGACCCGTCCGAATGCGTGTTTGATCAA----TACTGGAGAGGGTAGAGAGCATCCGC 4282 Query 97280 ATCATCAGCTGGTGGCTCGGCATCTCAAGGCTAAAAACCAATACGGGCTTATCGTTACGA 97339 ||||||| || | |||||||| | |||||||| || || || || || ||| Sbjct 4281 ATCATCAATTGATCAGCGGGCATCTCTAAGCTAAAAATCAGGACCGG-TTTGGATTGCGA 4223 Query 97340 -ACTGCGGCATTTTCGACGAGATTCATCGCAAACGTGGTCTTCCCCATAGATGGGCGGGC 97398 | || | | | | | || | ||||| ||||| |||||||| || || | ||| Sbjct 4222 CATGGCCACCTGCTGGCACATGTTGAGAGCAAAGGTGGTTTTCCCCATGGAGGGCCTGGC 4163 Query 97399 GGCGACAATGATGAGATCGGACGACTGAAGCCCTGCCGTCTTCTTATTGAGATCGGTAAA 97458 ||||||||||||||||| || ||| | ||||| || || |||| | ||| ||||| Sbjct 4162 AGCGACAATGATGAGATCAGAGTTCTGTAATCCTGCGGTTTTTTTATCTAAATCAGTAAA 4103 Query 97459 TCCGGTATCAAGTCCCGTTACACCATCATGCGGTCGCTGAAACAACTCTTCTATGCGAGA 97518 || || || || | | |||| || || ||| | | || ||| ||||| | Sbjct 4102 ACCCGTGGAGAGGCCTATCAGCCCATTCTGGGGATTGTGATAGAGCTTTTCGATGCGTGT 4043 Query 97519 TACCGTTGCATCGAGAATGCTGGCGATATCTTTTGGACCACTACCGCTCTTTTGTCGTT- 97577 || ||| | || ||||| | |||| || || || | |||| |||| || | Sbjct 4042 TAGCGTCTCTTCAAGAATTTTATTGATAGTTTGCGGTCC----CTGCTC-TTTGCCGCTC 3988 Query 97578 ----TTTCAGCTATTTCAAAAACGCGGCGTTCGGCCATATCCAGCAATTCATTGCTGCCC 97633 |||| || || | ||| || ||| ||||| | |||||||| || ||| Sbjct 3987 CGCGTTTCTGCGATCTGAAACACTCGGGACTCGGCAAAATCCAGCAGCTCGCCACTGTGG 3928 Query 97634 CGGCCATCCTGCGCATATCCAGCTTCAGCTATTTCAT 97670 ||||| | | || |||| | || || || || |||| Sbjct 3927 CGGCCTTGCGGCTCATAGACCGCATCGGCAATCTCAT 3891 Score = 87.8 bits (96), Expect = 1e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 96692 GCACCAGCATAGTTATCAAACCGTGAGTATTGGCCGTTAAAAGCCAATCTCACCGTGCCA 96751 ||||| |||||||| |||||||| ||||| ||||| | ||| | | | || |||||| Sbjct 5019 GCACCCGCATAGTTGTCAAACCGCGAGTAGTGGCCCTGAAAGGTGAGGCGTACGGTGCCA 4960 Query 96752 ATTGGGCCATTTCGTTGCTTTCCGATAATTACCTCGGCAATGCCCTTCATTTCGCTATCC 96811 |||||||| || || || || || || || | || ||||| ||||||| | || | | Sbjct 4959 ATTGGGCCGTTACGCTGTTTGCCAATGATGATTTCTGCAATTCCCTTCAGCTGACTGTTC 4900 Query 96812 GGGTGATAAACTTCGTCGCGATACAAAAACATGATCAGGTC 96852 ||||| || || || || || | ||| | ||||| ||| Sbjct 4899 TCATGATAGACCTCATCCCGGTAGATAAATAGGATCAAGTC 4859 >seq25273 Length=1437 Score = 118 bits (130), Expect = 7e-22 Identities = 140/189 (74%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 61865 ACCACCACTGTATCGCCTTCGCGGACGAAGCTCAGCAGCGCTTCGAGCTGGGGGCGCTGG 61924 |||||||| || ||||| || || ||| | || | || || || || || || Sbjct 1 ACCACCACG---TCTCCTTCACGCACAAAGGAGATCAAAACATCCAGTTGCGGTCGTTGA 57 Query 61925 GTGTCCTTGCCCGATGCCTTGTCGGTGAACACCTTGCTCACCTGGGTTTGTTCCAGCTGG 61984 ||||||||||| || |||||||||||||| || || || || ||||| || ||| Sbjct 58 GTGTCCTTGCCTGAAGCCTTGTCGGTGAATACTTTATCGACTTGAACATGTTCAAGTTGG 117 Query 61985 CGTTCCGGGTTCTGGTCAAAGCTGCTGACCCGGACGTAGCCGATGCGGTGCCCCTGCACG 62044 || |||||||| || |||||||||||||| |||| ||| || ||||| ||||||| || | Sbjct 118 CGCTCCGGGTTTTGATCAAAGCTGCTGACACGGATGTAACCTATGCGCTGCCCCTTCAAG 177 Query 62045 ATGTCTCCT 62053 || ||||| Sbjct 178 ATAGCTCCT 186 >seq7409 Length=4883 Score = 111 bits (122), Expect = 1e-19 Identities = 201/290 (69%), Gaps = 8/290 (3%) Strand=Plus/Minus Query 38660 TGTATTTAACCTTCAAATCCTCAATGACAATCATTGCGTGGTTTTTGCTGATGATCGTTG 38719 ||| ||||| || |||||||||||| || ||||| |||||||||||||||||| ||| Sbjct 4583 TGTTTTTAATCTGCAAATCCTCAATCACTATCATCGCGTGGTTTTTGCTGATGGCACTTG 4524 Query 38720 TGATTTTATGAAGGTAGTCTCTG-CGGATGTTTGCGATACGAAAATGCAGTCGCTGTATT 38778 | ||||||| || ||||| ||| || || || || || | |||||| | || ||| Sbjct 4523 AGGTTTTATGCAGATAGTC-CTGTCGAATATTGGCAATGGTATGATGCAGCTGTTGAATT 4465 Query 38779 TTGCGTTTCTGCATCTGCCAGTTGTTGCTGAATCTGACCTTGCGGCTTAACTGTCGCTGA 38838 |||| | || | | ||| | | |||||| | || | ||| ||||||||||| || Sbjct 4464 TTGCTTCGTTGTTTTTTCCAATGGGCACTGAATTTTACTTGGCGACTTAACTGTCGTTGC 4405 Query 38839 AGTCTCGCCA---GCTTCTTCTGGTTTTTCTGAAAACTATTTACAGGTTCAAAGACTGTG 38895 || || || | ||| | |||| | | | ||||| || || || ||||| | Sbjct 4404 AGCCTTGCTAAACGCTGTTGCTGG---GTACGGTAGCTATTAACGGGGGCATAGACTATA 4348 Query 38896 CCATCTGACAGCGTGGCGAGTTTAGCCACGCCAGCATCCAGTCCGACCAT 38945 |||||||||| ||||| | | ||| | || |||| | || ||||| Sbjct 4347 CCATCTGACAAAGTGGCCAATCGAGCTATCCCCACATCAACCCCTACCAT 4298 Score = 111 bits (122), Expect = 1e-19 Identities = 190/271 (70%), Gaps = 6/271 (2%) Strand=Plus/Minus Query 38515 ACCTGACCGCCACGCCAGAGCTGCTTGTACTCAAGCTGGCGGCGCATTTCATACCAGCCC 38574 ||||| || ||| |||| | |||||| ||||| ||||| | | | || ||||| ||| Sbjct 4881 ACCTGGCCCCCAAGCCACAACTGCTTATACTCCAGCTGTCTTCTGAGCTCGTACCAACCC 4822 Query 38575 TGATCCAGTATCGAACGGTTTAAACCTGATTTTGCCCGGACATTGCGCCCCGG--CTGAC 38632 || |||| || || || || || || || || || | ||| || ||| | Sbjct 4821 TGGTCCAAAATAGATTTATTCAAGCCAGACTTAGCTTTAACCCTTTTCCCAGGTTCTGCC 4762 Query 38633 TTATCGTACCCGCCGCTGACTTTGACATGTATTTAACCTTCAAATCCTCAATGACAATCA 38692 | || || | || || |||||||||| ||||| || |||||||||||| || |||| Sbjct 4761 --ACTGTCCCAGTGGCCGATTTTGACATGTTTTTAATCTGCAAATCCTCAATCACTATCA 4704 Query 38693 TTGCGTGGTTTTTGCTGATGATCGTTGTGATTTTATGAAGGTAGTCTCTG-CGGATGTTT 38751 | |||||||||||||||||| ||| | ||||||| || ||||| ||| || || || Sbjct 4703 TCGCGTGGTTTTTGCTGATGGCACTTGAGGTTTTATGCAGATAGTC-CTGTCGAATATTG 4645 Query 38752 GCGATACGAAAATGCAGTCGCTGTATTTTGC 38782 || || | |||||| | || ||||||| Sbjct 4644 GCAATGGTATGATGCAGCTGTTGAATTTTGC 4614 >seq11528 Length=3627 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 98315 ATGGTGGCCCCTACCGGACTTGAACCGGTGACCGTGCGATTATGAGTCGCCAGCTCTAAC 98374 |||||||||||| || || |||||| || |||| ||||||||||||| | |||||||| Sbjct 136 ATGGTGGCCCCTCCCCGATTTGAACGGGGGACCAAACGATTATGAGTCGTCTGCTCTAAC 77 Query 98375 CACTGAGCTAAAGGGCC 98391 ||||||||||| ||||| Sbjct 76 CACTGAGCTAAGGGGCC 60 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330779517585382