Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_031224.1
Length=59443
Score E
Sequences producing significant alignments: (Bits) Value
seq15550 89.7 2e-13
>seq15550
Length=6095
Score = 89.7 bits (98), Expect = 2e-13
Identities = 168/244 (69%), Gaps = 5/244 (2%)
Strand=Plus/Minus
Query 52077 GTCTCTGCTTGGAATGTGGGTGATTTGGATGATATGGCGTTGGCTCCCTGCCATACACTA 52136
||||| || ||| | || || || | ||| | |||||| | || || |||||| | |||
Sbjct 2378 GTCTCAGCCTGGGACGTTGGGGAGCTCGATCAGATGGCGCTAGCACCTTGCCATGCGCTA 2319
Query 52137 TTCCAATTCTATGTAGCTGAAGGTAA---GCTTTCGTGCCATTTGTATCAGCGGTCTGCC 52193
|||||||| ||||| | || | ||| || || ||||| | |||||||| |||
Sbjct 2318 TTCCAATTTTATGTCGATGGTGATAATCGCCTCTCTTGCCAACTCTATCAGCGCTCTTGT 2259
Query 52194 GACATGTTCTTGGGCGTTCCGTTTAACATTGCCAGCTATTCCTTGCTGACGCATCTGATT 52253
|| | || || || | || || || ||||| ||||| | | |||| |||||| |
Sbjct 2258 GATGTCTTTTTAGGGCTGCCCTTCAATATTGCTAGCTACGCACTATTGACCCATCTGGTG 2199
Query 52254 GCTCGAGCAGTTGGCCTT-GATGTTGGTGAATTCATTTGGACTGGTGGCGACGTCCATAT 52312
|| | |||||| | ||| | || ||||| || | |||| |||||| ||| ||| |
Sbjct 2198 GC-CCAGCAGTGCGACTTAGCGGTCGGTGACTTTGTCTGGAGTGGTGGTGACACCCACCT 2140
Query 52313 CTAC 52316
||||
Sbjct 2139 CTAC 2136
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 190029007436970
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |