Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq15550 89.7 2e-13 >seq15550 Length=6095 Score = 89.7 bits (98), Expect = 2e-13 Identities = 168/244 (69%), Gaps = 5/244 (2%) Strand=Plus/Minus Query 52077 GTCTCTGCTTGGAATGTGGGTGATTTGGATGATATGGCGTTGGCTCCCTGCCATACACTA 52136 ||||| || ||| | || || || | ||| | |||||| | || || |||||| | ||| Sbjct 2378 GTCTCAGCCTGGGACGTTGGGGAGCTCGATCAGATGGCGCTAGCACCTTGCCATGCGCTA 2319 Query 52137 TTCCAATTCTATGTAGCTGAAGGTAA---GCTTTCGTGCCATTTGTATCAGCGGTCTGCC 52193 |||||||| ||||| | || | ||| || || ||||| | |||||||| ||| Sbjct 2318 TTCCAATTTTATGTCGATGGTGATAATCGCCTCTCTTGCCAACTCTATCAGCGCTCTTGT 2259 Query 52194 GACATGTTCTTGGGCGTTCCGTTTAACATTGCCAGCTATTCCTTGCTGACGCATCTGATT 52253 || | || || || | || || || ||||| ||||| | | |||| |||||| | Sbjct 2258 GATGTCTTTTTAGGGCTGCCCTTCAATATTGCTAGCTACGCACTATTGACCCATCTGGTG 2199 Query 52254 GCTCGAGCAGTTGGCCTT-GATGTTGGTGAATTCATTTGGACTGGTGGCGACGTCCATAT 52312 || | |||||| | ||| | || ||||| || | |||| |||||| ||| ||| | Sbjct 2198 GC-CCAGCAGTGCGACTTAGCGGTCGGTGACTTTGTCTGGAGTGGTGGTGACACCCACCT 2140 Query 52313 CTAC 52316 |||| Sbjct 2139 CTAC 2136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190029007436970