Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_031280.1 Length=104906 Score E Sequences producing significant alignments: (Bits) Value seq15550 82.4 5e-11 >seq15550 Length=6095 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/211 (69%), Gaps = 9/211 (4%) Strand=Plus/Minus Query 70380 CACCATGTCATACACTATTCCAATTCTTTGTGGAAGATGGTAAGC---TTTCTTGCCAGC 70436 |||| || ||| | ||||||||||| | ||| || | || ||| | | |||||||| | Sbjct 2335 CACCTTGCCATGCGCTATTCCAATTTTATGTCGATGGTGATAATCGCCTCTCTTGCCAAC 2276 Query 70437 TATATCAACG---TAGTGCTGACATTTTACTTGGTGTGCCATTCAATATTGCATCATATG 70493 | ||||| || | ||| || | ||||| || |||| ||||||||||| || | Sbjct 2275 TCTATCAGCGCTCTTGTGATGTCTTTTTA---GGGCTGCCCTTCAATATTGCTAGCTACG 2219 Query 70494 CCTTACTTACACATCTTATTGCTGCTGAGTGTGGGTTAGGTGTTGGTGAGTTTGTTTGGA 70553 | || | || ||||| | || |||| | |||| || ||||| ||||| |||| Sbjct 2218 CACTATTGACCCATCTGGTGGCCCAGCAGTGCGACTTAGCGGTCGGTGACTTTGTCTGGA 2159 Query 70554 CTGGTGGTGATATCCATGTGTACTCGAATCA 70584 ||||||||| | ||| | ||| |||||| Sbjct 2158 GTGGTGGTGACACCCACCTCTACCTGAATCA 2128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 335453026619599