Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq8363 91.5 3e-13 >seq8363 Length=52898 Score = 91.5 bits (100), Expect = 3e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 ||||| || |||||||| || || ||||| ||| || || | ||||| |||| | Sbjct 26353 TGAAGTGTTGACTCTTTCTGAATATTGTAGTCGCTCAATGTGCGTCCATCCTCTAATTGT 26412 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||| ||||| | | || || || | | |||||||| || ||||||||||| Sbjct 26413 TTACCGGCAAAGATCAATCGTTGTTGATCTGGAGGAATTCCTTCTTTATCTTGAATTTTA 26472 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 || ||| | || | |||| || ||| ||||| || ||||| || || ||||| Sbjct 26473 GCCTTAACATTTTCAATCGTGTCCGATGGCTCGACTTCGAGGGTAATTGTCTTACCCGTC 26532 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||||| |||||| Sbjct 26533 AAGGTTTTGACGAAGATCTGCAT 26555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153382075145267