Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_031928.1 Length=169936 Score E Sequences producing significant alignments: (Bits) Value seq7918 123 3e-23 >seq7918 Length=32631 Score = 123 bits (136), Expect = 3e-23 Identities = 275/413 (67%), Gaps = 0/413 (0%) Strand=Plus/Plus Query 143370 CAGGTCGTTCAACTGGATTCCATAGTCCATATGACGAATACGGTTCTCATCGACACCCTT 143429 ||| | ||||| ||| | ||||| |||| ||| || | || || || || || ||| Sbjct 18035 CAGTTTGTTCAGCTGTACCCCATAATCCAGATGGCGTACCCGATTTTCCTCAACGCCCCG 18094 Query 143430 GTTGTTTTTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGT 143489 |||||||| | || | ||| ||| ||||| |||||| | ||||| | || Sbjct 18095 ATTGTTTTTTAACACTAACAGGGCTTCTACTTCGCGATGCCATAGCGGATAGAAGAGGGT 18154 Query 143490 AGCAGCGCCGCCACGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTT 143549 ||| || || || || | || ||||| || || ||||| || || || ||||||||||| Sbjct 18155 AGCGGCTCCCCCGCGCACACCGCCTTGGGAGCACGATTTGACGGCTGTTTGGAAATGTTT 18214 Query 143550 CCAGAATGGAATAACACCGGTATGCTTGACTTCGCCCATGCCAATACGAGAACCTTCAGC 143609 | || |||||| |||||||| | | || || || ||| | ||| || Sbjct 18215 GTAAAAAGGAATACAGCCGGTATGAAAGGCCTCACCGCCGCGAATGGGGCTGCCTAAGGC 18274 Query 143610 ACGAATCATACCAACGTTGATACCAATACCGGCACGTTTAGAAATGTATTCAATTATTGA 143669 || ||| | || | || || |||||||||||||||| ||| | ||||| | || | Sbjct 18275 GCGGATCTTGCCGGCATTAATCCCAATACCGGCACGTTGAGAGACGTATTTCACAATGGC 18334 Query 143670 GTTAGCAGTTTTGTTAATAGATTTCAGTGAGTCGCCTGCTTCAATAACCACACAAGAACT 143729 | || || || || || | | || | || || | ||||||||| || Sbjct 18335 ACTGGCGGTGGCATTGATGGAGTCTAAACTATCTGCACACTCGATTAACACACAAGAGCT 18394 Query 143730 AAATTGACGGGTTGGTGTACGTGCTCCAGCCATAATAGGAGTTGGTAATGAAA 143782 ||||||||||||||| ||||| | || |||||||| ||||| || | |||| Sbjct 18395 AAATTGACGGGTTGGGGTACGAACACCCGCCATAATCGGAGTAGGCAGCGAAA 18447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543465519856320