Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_031934.1 Length=168929 Score E Sequences producing significant alignments: (Bits) Value seq7918 127 2e-24 >seq7918 Length=32631 Score = 127 bits (140), Expect = 2e-24 Identities = 278/414 (67%), Gaps = 2/414 (0%) Strand=Plus/Plus Query 142451 CAGGTCGTTCAACTGGATTCCGTAGTCCATATGACGAATACGGTTCTCATCGACACCCTT 142510 ||| | ||||| ||| | || || |||| ||| || | || || || || || ||| Sbjct 18035 CAGTTTGTTCAGCTGTACCCCATAATCCAGATGGCGTACCCGATTTTCCTCAACGCCCCG 18094 Query 142511 GTTGTTTTTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGT 142570 |||||||| | || | ||| ||| ||||| |||||| | ||||| | || Sbjct 18095 ATTGTTTTTTAACACTAACAGGGCTTCTACTTCGCGATGCCATAGCGGATAGAAGAGGGT 18154 Query 142571 AGCAGCGCCGCCACGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTT 142630 ||| || || || || | || ||||| || || ||||| || || || ||||||||||| Sbjct 18155 AGCGGCTCCCCCGCGCACACCGCCTTGGGAGCACGATTTGACGGCTGTTTGGAAATGTTT 18214 Query 142631 CCAGAATGGAATAACACCGGTATGCTTGACTTCGCCCATGCCAATACGAGAACCTTCAGC 142690 | || |||||| |||||||| | | || || || ||| | ||| || Sbjct 18215 GTAAAAAGGAATACAGCCGGTATGAAAGGCCTCACCGCCGCGAATGGGGCTGCCTAAGGC 18274 Query 142691 ACGAATCATACCAACGTTGATACCAATACCTGCACGTTTAGAAATGTATTCAATTATTGA 142750 || ||| | || | || || |||||||| ||||||| ||| | ||||| | || | Sbjct 18275 GCGGATCTTGCCGGCATTAATCCCAATACCGGCACGTTGAGAGACGTATTTCACAATGGC 18334 Query 142751 GTTAGCAGTTTTGTTAATAGA-TTTCAGCGAGTCGCCGGCTTCAATAACCACACAAGAAC 142809 | || || || || || | | | | | || | || || | ||||||||| | Sbjct 18335 ACTGGCGGTGGCATTGATGGAGTCTAAACTA-TCTGCACACTCGATTAACACACAAGAGC 18393 Query 142810 TAAATTGACGGGTTGGTGTACGTGCTCCAGCCATAATAGGAGTAGGCAATGAAA 142863 |||||||||||||||| ||||| | || |||||||| |||||||||| |||| Sbjct 18394 TAAATTGACGGGTTGGGGTACGAACACCCGCCATAATCGGAGTAGGCAGCGAAA 18447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540244315245880