Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq29645 93.3 5e-14 seq29583 87.8 2e-12 seq19326 86.0 7e-12 >seq29645 Length=10875 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 17705 GGGGTTGTAGCTCAGTCGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGAGGGTTCAAG 17764 |||| ||||||||||| ||||||||||| ||||||||||||| || ||| ||||||||| Sbjct 467 GGGGGTGTAGCTCAGTTGGTTAGAGCGCATGCCTGTCACGCATGAGGTCACGGGTTCAAG 526 Query 17765 TCCCTTCAGTCCCG 17778 |||| ||| ||||| Sbjct 527 TCCCGTCATTCCCG 540 >seq29583 Length=6804 Score = 87.8 bits (96), Expect = 2e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 17866 TAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGTCCGCTAT 17925 ||||||||||||||||||||||| ||||||||||| | ||||||||||||| |||||| Sbjct 6712 TAGCTCAGTTGGTAGAGCGCCTGTTTTGCAAGCAGAAGGTCAGCGGTTCGACTCCGCTTG 6771 Query 17926 TCTCCA 17931 ||||| Sbjct 6772 CCTCCA 6777 >seq19326 Length=6529 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 17859 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 17917 ||||||||||||||| ||| |||||||||||| ||||| |||||| |||| ||||||| Sbjct 3620 GGGGAATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAAGGGTTCGAC 3561 Query 17918 TCCGCTATTCTCCA 17931 ||| ||||||||| Sbjct 3560 TCCCTTATTCTCCA 3547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596085992390320