Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq3668 178 3e-39 seq8363 156 9e-33 >seq3668 Length=32275 Score = 178 bits (196), Expect = 3e-39 Identities = 182/238 (76%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| |||| ||| || || ||| |||||||| ||||||||| Sbjct 30901 ACCACCACGAAGACGAAGAACCAAATGCAATGTTGATTCCTTTTGGATATTGTAGTCACT 30842 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || ||||| || | |||||| || || ||||| ||||||||||| || || Sbjct 30841 CAATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGG 30782 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || || ||||||||||||||||| || || | ||||||||||| |||| || || Sbjct 30781 AATTCCTTCTTTGTCTTGGATCTTTGCCTTGACATTTTCGATAGTGTCAGAAGGCTCAAC 30722 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCATATAC 283109 ||| | |||||| || ||||| || || || || ||||| || ||||| || || ||| Sbjct 30721 TTCCAAAGTGATGGTTTTACCAGTTAATGTTTTGACGAAGATTTGCATCTTGATGTAC 30664 >seq8363 Length=52898 Score = 156 bits (172), Expect = 9e-33 Identities = 149/191 (78%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| || || |||||||| | ||||| |||||||||| |||||| ||||||||| Sbjct 26365 TCTTTCTGAATATTGTAGTCGCTCAATGTGCGTCCATCCTCTAATTGTTTACCGGCAAAG 26424 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| |||||||| || ||||| || || || ||||| || || || || || | Sbjct 26425 ATCAATCGTTGTTGATCTGGAGGAATTCCTTCTTTATCTTGAATTTTAGCCTTAACATTT 26484 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || |||||||| | ||||||||||| || || |||||||||||||| || || ||| Sbjct 26485 TCAATCGTGTCCGATGGCTCGACTTCGAGGGTAATTGTCTTACCCGTCAAGGTTTTGACG 26544 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 26545 AAGATCTGCAT 26555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046341191484758