Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq9081 334 8e-87 seq27324 100 3e-16 >seq9081 Length=2203 Score = 334 bits (370), Expect = 8e-87 Identities = 587/842 (70%), Gaps = 22/842 (3%) Strand=Plus/Plus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTC 23264 ||| || || | ||||||||||| ||||| || ||| || || || ||||| ||||| Sbjct 35 CATGACTCCACTCTTTTGATATTCGCCAACCTTTCGTTCAAAGAAGTTAGTCTTGCCCTC 94 Query 23265 TAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGA 23324 | ||| || ||||||||| |||||||| |||||||| || ||| || | Sbjct 95 AAGTGAAATTAATTCCATAAATGAGAATGGATTTTTGGTATTATAGAC--CTTGTCAAGT 152 Query 23325 T--AATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAG 23382 ||||| ||| | ||| ||||| |||||||| |||| | |||| |||||| | Sbjct 153 CCCAATTCGCCTAATAAATGATCGGCTACGAATTCAATGTATTCAGACATTAAATCACAA 212 Query 23383 TTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACA 23442 || || || | | |||||||||| || ||| || ||| |||||||| ||| Sbjct 213 TTCATGCCCAACATCTTTACTGGAAGTGCGTCAGTCAAAAATTCCTTTTCAATCTTTACA 272 Query 23443 GCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATATTT--TAA-ATACTTA 23499 || ||| | || |||| ||||| ||||| | ||||| | | ||| || || Sbjct 273 GCCTCTGTGATAATTTCAACAACTCGTTCTT---TTGGTGGCTTCTGAATAAGATGTTTG 329 Query 23500 AACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAA 23559 ||| ||| |||||||| |||| ||| || ||||| || || ||| | |||||| || Sbjct 330 TACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAG 389 Query 23560 AATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCG 23619 ||||| || |||||||||||||| || || ||||||||||| ||||| ||||| ||| Sbjct 390 AATGTCAAACCTGGCATTAATCCACGCTTCTTAATCCAAAAGATTGCTGCAAAGCTTCCA 449 Query 23620 GAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTA 23679 ||||||||| ||||| ||||| |||||||| | || ||| |||||| |||||| Sbjct 450 CTAAAGAAAATCCCCTCGACAGCAGCAAAGGCAATAACTCGTTCACCAAAGTTTGCATGC 509 Query 23680 TAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCA 23739 | | || ||||| ||| | ||| | ||||| ||||| ||| | || ||| Sbjct 510 TTACTGGATATCCAATTTAAGGCCCAGTCTGCCTTTTTCTTTACGCACGGTAAAGTCTCA 569 Query 23740 ATTGCTTTTAAGAGAAAAGTTTTTTCTTCATT--ATCTGTTATATATGTATCAATTAGTA 23797 || || || || | | ||| | || | || ||| ||||| || |||||||| | Sbjct 570 ATAGCATTGAATA-AGAAG-TCACGCTGCTTTGCATCACGGATATAAGTTTCAATTAG-A 626 Query 23798 AACTA-TACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTA 23856 | | | ||||| || || || | |||||| |||||||| || || |||||||| ||| | Sbjct 627 ATCGAGTACATCTCTGAGTGTACATTTTCCATAGCAATTTGGAATCCATAAAAGAATCGA 686 Query 23857 GCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCA 23916 ||||| | | |||||| || | | |||| || | ||| || || || ||||| || Sbjct 687 GCTTCTGTTACTTGAACTTCCTGACTGAATCGTTCAATTAAGTTCTCATTTACAATGCCG 746 Query 23917 TCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTC---ATCAGTTGAT 23973 || ||||||||||| || | || | | ||||| || | ||| ||| | | Sbjct 747 TCTGATGCAGCAAAGAATGCTAATACGTGTGAGATAAAGTGACGTTCTGAATCCTT---T 803 Query 23974 AATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTT 24033 ||||||| ||| ||| | ||||||||||||||||| ||||| || |||||||| || ||| Sbjct 804 AATTTTTCCCAGTCACTCATATCTTTTGATAAATCGACTTCTTCGACTGTCCAGAAGCTT 863 Query 24034 GC 24035 || Sbjct 864 GC 865 >seq27324 Length=21994 Score = 100 bits (110), Expect = 3e-16 Identities = 164/226 (73%), Gaps = 14/226 (6%) Strand=Plus/Plus Query 128490 CCAGGTAAAAGAAAATGGTTAAAGGTAAAAAGGGATTATTTAAATAATGGATCAATGGCA 128549 || || ||||| |||||||||||| |||| ||||||||||| | |||||||| ||| Sbjct 5032 CCGGGAAAAAGGCGATGGTTAAAGGTCAAAAAGGATTATTTAATGCAAGGATCAATAGCA 5091 Query 128550 GATTCTGCTGATTTAGTTGTGTTGGGTGCATATTATGGTAAAGGTAAAAGATATGGAGGA 128609 || ||| || || || ||||||||||| | |||||| | ||| ||||| | | | Sbjct 5092 GACAGTGCAGACTTGGTCGTGTTGGGTGCTTTTTATGGAACGGGT--AAGAT---GGGTA 5146 Query 128610 ATAAAAT--CTATATTTCTTATGGGATGTTATGATAAAGAAACAGATA-CATGGAAAACT 128666 || | | ||| ||| | ||||||||||||||| ||||| | | |||||| || Sbjct 5147 ATCGATTTAGTATCTTTTTAATGGGATGTTATGAT-GAGAAATGTAAAGTATGGAAGACA 5205 Query 128667 GTTACAAAA-TGCTCAG-GGTTTA-ATGATGAAACATT--AAAAGA 128707 || |||||| | | ||| || ||| |||||| ||| | |||||| Sbjct 5206 GTCACAAAAGTTCACAGTGGATTAGATGATGCGACAATGGAAAAGA 5251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521294547507800