Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq9081 334 8e-87
seq27324 100 3e-16
>seq9081
Length=2203
Score = 334 bits (370), Expect = 8e-87
Identities = 587/842 (70%), Gaps = 22/842 (3%)
Strand=Plus/Plus
Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTC 23264
||| || || | ||||||||||| ||||| || ||| || || || ||||| |||||
Sbjct 35 CATGACTCCACTCTTTTGATATTCGCCAACCTTTCGTTCAAAGAAGTTAGTCTTGCCCTC 94
Query 23265 TAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGA 23324
| ||| || ||||||||| |||||||| |||||||| || ||| || |
Sbjct 95 AAGTGAAATTAATTCCATAAATGAGAATGGATTTTTGGTATTATAGAC--CTTGTCAAGT 152
Query 23325 T--AATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAG 23382
||||| ||| | ||| ||||| |||||||| |||| | |||| |||||| |
Sbjct 153 CCCAATTCGCCTAATAAATGATCGGCTACGAATTCAATGTATTCAGACATTAAATCACAA 212
Query 23383 TTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACA 23442
|| || || | | |||||||||| || ||| || ||| |||||||| |||
Sbjct 213 TTCATGCCCAACATCTTTACTGGAAGTGCGTCAGTCAAAAATTCCTTTTCAATCTTTACA 272
Query 23443 GCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATATTT--TAA-ATACTTA 23499
|| ||| | || |||| ||||| ||||| | ||||| | | ||| || ||
Sbjct 273 GCCTCTGTGATAATTTCAACAACTCGTTCTT---TTGGTGGCTTCTGAATAAGATGTTTG 329
Query 23500 AACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAA 23559
||| ||| |||||||| |||| ||| || ||||| || || ||| | |||||| ||
Sbjct 330 TACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAG 389
Query 23560 AATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCG 23619
||||| || |||||||||||||| || || ||||||||||| ||||| ||||| |||
Sbjct 390 AATGTCAAACCTGGCATTAATCCACGCTTCTTAATCCAAAAGATTGCTGCAAAGCTTCCA 449
Query 23620 GAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTA 23679
||||||||| ||||| ||||| |||||||| | || ||| |||||| ||||||
Sbjct 450 CTAAAGAAAATCCCCTCGACAGCAGCAAAGGCAATAACTCGTTCACCAAAGTTTGCATGC 509
Query 23680 TAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCA 23739
| | || ||||| ||| | ||| | ||||| ||||| ||| | || |||
Sbjct 510 TTACTGGATATCCAATTTAAGGCCCAGTCTGCCTTTTTCTTTACGCACGGTAAAGTCTCA 569
Query 23740 ATTGCTTTTAAGAGAAAAGTTTTTTCTTCATT--ATCTGTTATATATGTATCAATTAGTA 23797
|| || || || | | ||| | || | || ||| ||||| || |||||||| |
Sbjct 570 ATAGCATTGAATA-AGAAG-TCACGCTGCTTTGCATCACGGATATAAGTTTCAATTAG-A 626
Query 23798 AACTA-TACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTA 23856
| | | ||||| || || || | |||||| |||||||| || || |||||||| ||| |
Sbjct 627 ATCGAGTACATCTCTGAGTGTACATTTTCCATAGCAATTTGGAATCCATAAAAGAATCGA 686
Query 23857 GCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCA 23916
||||| | | |||||| || | | |||| || | ||| || || || ||||| ||
Sbjct 687 GCTTCTGTTACTTGAACTTCCTGACTGAATCGTTCAATTAAGTTCTCATTTACAATGCCG 746
Query 23917 TCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTC---ATCAGTTGAT 23973
|| ||||||||||| || | || | | ||||| || | ||| ||| | |
Sbjct 747 TCTGATGCAGCAAAGAATGCTAATACGTGTGAGATAAAGTGACGTTCTGAATCCTT---T 803
Query 23974 AATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTT 24033
||||||| ||| ||| | ||||||||||||||||| ||||| || |||||||| || |||
Sbjct 804 AATTTTTCCCAGTCACTCATATCTTTTGATAAATCGACTTCTTCGACTGTCCAGAAGCTT 863
Query 24034 GC 24035
||
Sbjct 864 GC 865
>seq27324
Length=21994
Score = 100 bits (110), Expect = 3e-16
Identities = 164/226 (73%), Gaps = 14/226 (6%)
Strand=Plus/Plus
Query 128490 CCAGGTAAAAGAAAATGGTTAAAGGTAAAAAGGGATTATTTAAATAATGGATCAATGGCA 128549
|| || ||||| |||||||||||| |||| ||||||||||| | |||||||| |||
Sbjct 5032 CCGGGAAAAAGGCGATGGTTAAAGGTCAAAAAGGATTATTTAATGCAAGGATCAATAGCA 5091
Query 128550 GATTCTGCTGATTTAGTTGTGTTGGGTGCATATTATGGTAAAGGTAAAAGATATGGAGGA 128609
|| ||| || || || ||||||||||| | |||||| | ||| ||||| | | |
Sbjct 5092 GACAGTGCAGACTTGGTCGTGTTGGGTGCTTTTTATGGAACGGGT--AAGAT---GGGTA 5146
Query 128610 ATAAAAT--CTATATTTCTTATGGGATGTTATGATAAAGAAACAGATA-CATGGAAAACT 128666
|| | | ||| ||| | ||||||||||||||| ||||| | | |||||| ||
Sbjct 5147 ATCGATTTAGTATCTTTTTAATGGGATGTTATGAT-GAGAAATGTAAAGTATGGAAGACA 5205
Query 128667 GTTACAAAA-TGCTCAG-GGTTTA-ATGATGAAACATT--AAAAGA 128707
|| |||||| | | ||| || ||| |||||| ||| | ||||||
Sbjct 5206 GTCACAAAAGTTCACAGTGGATTAGATGATGCGACAATGGAAAAGA 5251
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521294547507800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |