Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq3947 131 2e-25 seq2126 96.9 5e-15 >seq3947 Length=2916 Score = 131 bits (144), Expect = 2e-25 Identities = 294/435 (68%), Gaps = 10/435 (2%) Strand=Plus/Plus Query 50475 GGAGATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGCGTTACATAAAT 50534 || ||||| || || ||||| || ||||||||| | |||||||| || | || | | Sbjct 1122 GGTGATTTGGGTCCAGTTTATGGATTTCAATGGCGTCATTTTGGTGCCCAATATAAGACA 1181 Query 50535 TGCGA-CGTAAATTACGAAGGTCAAGGCGTGGATCAACTGCAAAAAATTAT--AACGACG 50591 ||||| | | ||| | || ||||| | |||||| | || | |||| |||| | Sbjct 1182 TGCGATCATGAAT-ATGACAAACAAGGAATTGATCAATTAAAAGATGTTATTGAACG-CA 1239 Query 50592 TTGAAAACAAACCCCGACGATCGGCGTATTTTAATGACCGCCTGGAATCCAACCGATATA 50651 || ||| | || || | ||||| || ||| | | | |||||||||||| ||||| Sbjct 1240 TT-AAATCTAATCCAAATGATCGACGAATTATTTTAAGTGCCTGGAATCCAGTGGATATT 1298 Query 50652 GATCAAACCGTTTTACCTCCGTGTCATGTTTTATGTCAATTTTATGCCACAGACAATGTT 50711 |||| | | || || |||||| | | || ||||||| | || | | Sbjct 1299 CCACAAATGGCACTTCCACCATGTCATTGTCTGGTACAGTTTTATGTCGCAAATGGCGAG 1358 Query 50712 TTATCCTGTCAATGTTATCAAAGATCAGCTGATATGGGTTTAGGCGTTCCTTTCAACGTA 50771 || || |||| || ||||||||||||||||||||| | || |||||||| || | Sbjct 1359 TTGAGTTGCCAATTATACCAAAGATCAGCTGATATGGGTCTCGGAGTTCCTTTTAATATC 1418 Query 50772 GCTTCTTACGCTTTATTAACGTATTTGATCGCTCAAGCCGTCGATATGAAACCGGGAGAA 50831 || || |||||| |||| ||||| |||| ||||| | || | || || || || Sbjct 1419 GCATCATACGCTCTATTGACGTACATGATTGCTCATGTTACAAATTTAAAGCCTGGCGAT 1478 Query 50832 TTTATTCATACGTTAGGAGACGCTCATATTTACCTCGATCACGTCGATGCTTTAAAGGAG 50891 ||| ||||||| || || || |||||||||||| ||||| | || || | || ||| Sbjct 1479 TTTGTTCATACTTTTGGTGATGCTCATATTTACACGAATCACATTGAGCCTCTCAAAGAG 1538 Query 50892 CAATTGACTCGAACG 50906 || ||||||||| Sbjct 1539 CA----ACTCGAACG 1549 >seq2126 Length=22511 Score = 96.9 bits (106), Expect = 5e-15 Identities = 266/400 (67%), Gaps = 26/400 (7%) Strand=Plus/Minus Query 155745 GATTGAGCGGCGCGTACCAACCCTTCCAATTCAGCGCCGCTGTAATTTTTAGTTTCA-AC 155803 ||||| || || || || || |||||||||||||| || ||| |||| ||||| | Sbjct 17797 GATTGTGCTGCACGAACTAAACCTTCCAATTCAGCACCACTGAAATTCTTAGTAAGTGAT 17738 Query 155804 GGCTATTTTATTTAAGTCTACGTCGGAAGCTAATATGTTGTGAGATT---TCAT---TTT 155857 | | ||| || || || ||||| | | |||| | | | | ||| |||| ||| Sbjct 17737 GCCAATTCGATACAA-TCAACGTCAGCAT-TAATTT--TCTTAAATTCTCTCATACGTTT 17682 Query 155858 AGCAACGTGCACCTTTAAAATTTGAAGACGCCCCTTTTCATCGGGTAATCCAATTTCTAT 155917 | | || | || |||||||| | || || ||||| || || |||||||| || Sbjct 17681 TGTA---TGAATATTCAAAATTTGTACTCGTCCAGGTTCATTAGGCAAGCCAATTTCCAT 17625 Query 155918 CTTCAATTCCAACCGCCCAGGTCTTAATAATGCTTCGTCAATTAAGTCGGGTCTGTTGGT 155977 | | || || | |||||||| | ||| || || ||||| | ||| ||| || || Sbjct 17624 TTGAACCTCTAATCTACCAGGTCTCATTAAAGCATCATCAATCATGTCACGTCGATTTGT 17565 Query 155978 CATACCTATGATTAAAATGTTGTTTAAAGATTCTACACCGTCTATTTTAGACAATAATTG 156037 |||||| || | |||||||| ||||| || |||||||| || || | |||||||| Sbjct 17564 CATACCAATAACCAAAATGTTATTTAATTGCTCAACACCGTCGATCTTGGCTAATAATTG 17505 Query 156038 ATTGACTACGGCGTCGT----GCGTGGCGTT--ATCA------CCGCGTTTTTTACACAG 156085 ||| || || | |||| || || || | || || || |||||| | Sbjct 17504 ATTCACAACCGTATCGTGGACGCCTGAATTTCCAGCAACTGAGCCTCGAGATTTACAAAT 17445 Query 156086 AGCATCTATTTCATCGAAGACGATAACGTGTAATCCGCTG 156125 |||||| ||||| || || | ||||| ||| | |||||| Sbjct 17444 AGCATCGATTTCGTCAAATATGATAATGTGAAGACCGCTG 17405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 666827740116120