Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3668 125 2e-23 seq8363 104 6e-17 >seq3668 Length=32275 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| | || || ||||| ||||| | || || || || ||| Sbjct 30677 CAAATCTTCGTCAAAACATTAACTGGTAAAACCATCACTTTGGAAGTTGAGCCTTCTGAC 30736 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| |||||| || |||||||||||||| || || || || ||| Sbjct 30737 ACTATCGAAAATGTCAAGGCAAAGATCCAAGACAAAGAAGGAATTCCACCAGATCAACAA 30796 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || ||||| | ||||||||| | || | || || || || Sbjct 30797 CGTTTAATCTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGAGTGACTACAATATC 30856 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| ||||||||| ||||| | ||| Sbjct 30857 CAAAAGGAATCAACATTGCATTTGGTT 30883 >seq8363 Length=52898 Score = 104 bits (114), Expect = 6e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| | || || || || || |||||||| || || || ||| Sbjct 26552 CAGATCTTCGTCAAAACCTTGACGGGTAAGACAATTACCCTCGAAGTCGAGCCATCGGAC 26493 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || || ||||| || ||||||||||| ||||| || || ||| Sbjct 26492 ACGATTGAAAATGTTAAGGCTAAAATTCAAGATAAAGAAGGAATTCCTCCAGATCAACAA 26433 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||| ||||| ||||| | || |||||| | || | ||| || || | Sbjct 26432 CGATTGATCTTTGCCGGTAAACAATTAGAGGATGGACGCACATTGAGCGACTACAATATT 26373 Query 178104 CAAAAAGAATCAACACTGCA 178123 || ||||| |||||||| || Sbjct 26372 CAGAAAGAGTCAACACTTCA 26353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203273497386338