Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq10 145 2e-29 seq782 141 2e-28 >seq10 Length=552578 Score = 145 bits (160), Expect = 2e-29 Identities = 280/411 (68%), Gaps = 4/411 (1%) Strand=Plus/Plus Query 61081 GAATTTGTCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAG 61140 || ||| ||| ||||| ||||| ||| ||||||||||||| |||| ||| ||||| | Sbjct 300325 GATTTTATCAGGCATCTACATCAGAATTGTATGGAAAAGTAGTGGAAACTCCACAAACTG 300384 Query 61141 AAAGGACTCCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGA 61200 | | ||| || || ||||| | || || |||| || || ||||| || | ||||||| Sbjct 300385 AGAAGACACCATTCTATCCAAGAAGTCCATATGCAGTAGCTAAACTTTATGGATACTGGA 300444 Query 61201 TTTGTAAAAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAATC 61260 | || ||||||||| || | || || |||| || |||||| |||| || |||| Sbjct 300445 TCATTATAAATTACCGTGAAGCTTACGGTATGTATGCATGTAATGGTATTTTATTTAATC 300504 Query 61261 ACGAGAGTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAA 61320 | || || | ||||| | | || || || | |||||||| | || || | Sbjct 300505 ATGAATCGCCAAGGAGAGGAGAAAATTTCGTTACAAGGAAAATTACCCGATCAGTCGCTA 300564 Query 61321 ATATTT--TTAACGGTGTCGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGA 61378 | |||| |||| | || ||| | || | || || || | ||||| ||| | || Sbjct 300565 AAATTTCATTAAAG--CAACAAGAATTCTTGGAACTTGGTAATCTTGACTCAAAACGTGA 300622 Query 61379 TTGGGGATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGATACTCC 61438 |||||| |||| | || || | || ||||||||| ||||||||||||| ||| || Sbjct 300623 TTGGGGTCATGCAAAGGACTACGTGGAAGCTATGTGGATGATGTTGCAACAGGATCAGCC 300682 Query 61439 AGATGACTACGTTATTGCGACTGGACAGACGACGAGTGTCCGTGAATTCGT 61489 ||| || | || ||||| || || | || ||||| || ||||| || Sbjct 300683 AGAAGATTTTGTAATTGCTACAGGCGAAACTCGCAGTGTACGAGAATTTGT 300733 >seq782 Length=54866 Score = 141 bits (156), Expect = 2e-28 Identities = 320/471 (68%), Gaps = 14/471 (3%) Strand=Plus/Minus Query 281559 GGATTATAACTGGGAATGTTAGTAGACCAACCGGTTCCAATACCACTTGAACCATTTACC 281618 ||||||| || ||||| || || ||||| || || |||||||| | |||||||| Sbjct 42953 GGATTATGACATGGAATTTTTGTTGACCATCCAGTACCAATACCTTCAGCGCCATTTACA 42894 Query 281619 AAAATACTCGGGATAATAGGTACATAACATTCTGGTTCAATTTTATCACCATCATCATAC 281678 | || | || ||||| || |||||| |||| || ||||| | | || |||| | Sbjct 42893 AGAACCATTGGAATAATTGGAACATAATATTCAGGCTCAATACGCTGATTGTCTTCATCC 42834 Query 281679 AAATACTTCAG--AAGGTT-ATCATCTGTATCGACGAAAACCTGTCGCGTCTTAGGGTTC 281735 ||| | || || |||| | ||||| || || || || || || | || | || Sbjct 42833 AAAAAGTTAAGCAAAGGATCATCATGTGGATGGAAGATG---TGACGAG-CTAATGGCGA 42778 Query 281736 A-GTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCC 281794 | | ||||||| ||||| | | ||| || ||||| || ||| | | || || Sbjct 42777 AAGCATCGTGAAAATATAACGAGGACTTGCAGAATCTTTTCCTCCCGTTAAACGCGTACC 42718 Query 281795 AAACTGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAG 281854 ||||||||| | || | | | ||||| || || || ||||| |||| ||||||| Sbjct 42717 AAACTGACCATTAGGTTGAAGCAAATTAATATTGTTACTTCCGACATAATTTTGAGCCAA 42658 Query 281855 GTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAAC 281914 || || ||||| | ||| || || ||||| || ||||| || || ||||||||||| Sbjct 42657 ATTAACAATTGTACTGCAAAGTGAAACTTCACCATGATGATATGCACTCTGTTCGGCAAC 42598 Query 281915 ATAACCACTGAACTGTGCTACCTTCACGTC--TGATGTCAAGTTGCGTTTGAAAGCGCAA 281972 ||||| ||||| || || || || || | ||||| || ||||| ||||| Sbjct 42597 GGAACCAGCCAACTGAGCAACTTTAACCTCCTTTTTGTCA--TTACGTTT-AAAGCATGT 42541 Query 281973 TATAAT-ACTTTTCGTTGAGAAGGCTTGAAACCATCAACGACAGACGGAAT 282022 | ||| | ||| |||||| |||||| ||||||||||| ||| | ||||| Sbjct 42540 AAAAATGATTTTACGTTGACCAGGCTTAAAACCATCAACAACACATGGAAT 42490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057471273545750