Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07]
26,025 sequences; 213,462,749 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq10 145 2e-29
seq782 141 2e-28
>seq10
Length=552578
Score = 145 bits (160), Expect = 2e-29
Identities = 280/411 (68%), Gaps = 4/411 (1%)
Strand=Plus/Plus
Query 61081 GAATTTGTCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAG 61140
|| ||| ||| ||||| ||||| ||| ||||||||||||| |||| ||| ||||| |
Sbjct 300325 GATTTTATCAGGCATCTACATCAGAATTGTATGGAAAAGTAGTGGAAACTCCACAAACTG 300384
Query 61141 AAAGGACTCCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGA 61200
| | ||| || || ||||| | || || |||| || || ||||| || | |||||||
Sbjct 300385 AGAAGACACCATTCTATCCAAGAAGTCCATATGCAGTAGCTAAACTTTATGGATACTGGA 300444
Query 61201 TTTGTAAAAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAATC 61260
| || ||||||||| || | || || |||| || |||||| |||| || ||||
Sbjct 300445 TCATTATAAATTACCGTGAAGCTTACGGTATGTATGCATGTAATGGTATTTTATTTAATC 300504
Query 61261 ACGAGAGTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAA 61320
| || || | ||||| | | || || || | |||||||| | || || |
Sbjct 300505 ATGAATCGCCAAGGAGAGGAGAAAATTTCGTTACAAGGAAAATTACCCGATCAGTCGCTA 300564
Query 61321 ATATTT--TTAACGGTGTCGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGA 61378
| |||| |||| | || ||| | || | || || || | ||||| ||| | ||
Sbjct 300565 AAATTTCATTAAAG--CAACAAGAATTCTTGGAACTTGGTAATCTTGACTCAAAACGTGA 300622
Query 61379 TTGGGGATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGATACTCC 61438
|||||| |||| | || || | || ||||||||| ||||||||||||| ||| ||
Sbjct 300623 TTGGGGTCATGCAAAGGACTACGTGGAAGCTATGTGGATGATGTTGCAACAGGATCAGCC 300682
Query 61439 AGATGACTACGTTATTGCGACTGGACAGACGACGAGTGTCCGTGAATTCGT 61489
||| || | || ||||| || || | || ||||| || ||||| ||
Sbjct 300683 AGAAGATTTTGTAATTGCTACAGGCGAAACTCGCAGTGTACGAGAATTTGT 300733
>seq782
Length=54866
Score = 141 bits (156), Expect = 2e-28
Identities = 320/471 (68%), Gaps = 14/471 (3%)
Strand=Plus/Minus
Query 281559 GGATTATAACTGGGAATGTTAGTAGACCAACCGGTTCCAATACCACTTGAACCATTTACC 281618
||||||| || ||||| || || ||||| || || |||||||| | ||||||||
Sbjct 42953 GGATTATGACATGGAATTTTTGTTGACCATCCAGTACCAATACCTTCAGCGCCATTTACA 42894
Query 281619 AAAATACTCGGGATAATAGGTACATAACATTCTGGTTCAATTTTATCACCATCATCATAC 281678
| || | || ||||| || |||||| |||| || ||||| | | || |||| |
Sbjct 42893 AGAACCATTGGAATAATTGGAACATAATATTCAGGCTCAATACGCTGATTGTCTTCATCC 42834
Query 281679 AAATACTTCAG--AAGGTT-ATCATCTGTATCGACGAAAACCTGTCGCGTCTTAGGGTTC 281735
||| | || || |||| | ||||| || || || || || || | || | ||
Sbjct 42833 AAAAAGTTAAGCAAAGGATCATCATGTGGATGGAAGATG---TGACGAG-CTAATGGCGA 42778
Query 281736 A-GTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCC 281794
| | ||||||| ||||| | | ||| || ||||| || ||| | | || ||
Sbjct 42777 AAGCATCGTGAAAATATAACGAGGACTTGCAGAATCTTTTCCTCCCGTTAAACGCGTACC 42718
Query 281795 AAACTGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAG 281854
||||||||| | || | | | ||||| || || || ||||| |||| |||||||
Sbjct 42717 AAACTGACCATTAGGTTGAAGCAAATTAATATTGTTACTTCCGACATAATTTTGAGCCAA 42658
Query 281855 GTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAAC 281914
|| || ||||| | ||| || || ||||| || ||||| || || |||||||||||
Sbjct 42657 ATTAACAATTGTACTGCAAAGTGAAACTTCACCATGATGATATGCACTCTGTTCGGCAAC 42598
Query 281915 ATAACCACTGAACTGTGCTACCTTCACGTC--TGATGTCAAGTTGCGTTTGAAAGCGCAA 281972
||||| ||||| || || || || || | ||||| || ||||| |||||
Sbjct 42597 GGAACCAGCCAACTGAGCAACTTTAACCTCCTTTTTGTCA--TTACGTTT-AAAGCATGT 42541
Query 281973 TATAAT-ACTTTTCGTTGAGAAGGCTTGAAACCATCAACGACAGACGGAAT 282022
| ||| | ||| |||||| |||||| ||||||||||| ||| | |||||
Sbjct 42540 AAAAATGATTTTACGTTGACCAGGCTTAAAACCATCAACAACACATGGAAT 42490
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057471273545750
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |