Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq119 190 2e-43 seq726 87.8 2e-12 >seq119 Length=197918 Score = 190 bits (210), Expect = 2e-43 Identities = 531/809 (66%), Gaps = 12/809 (1%) Strand=Plus/Plus Query 16696 TTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAA-GGATTAG 16754 |||||| ||||| || |||||||| || || ||| ||||| |||| | || ||||| Sbjct 167181 TTCGAAGAAGTTTGTCTTGCCCTCAAGTGAAATAAATTCCAT-AAATGAGAATGGATTTT 167239 Query 16755 TAGCTGAAAATATTTTAG--AGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTC 16812 | | | | | |||| ||| |||| ||| | | ||| ||| || |||||||| Sbjct 167240 TGGTATTATAGACTTTATCAAGT--CCCAATTCACCCAATAAATGATCAGCAACAAATTC 167297 Query 16813 TATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGT 16872 ||| || || |||||| || || ||||| || | | || ||||| || || || Sbjct 167298 TATGTACTGAGTCATTAAATCACAATTCATGCCCAACATCTTAACTGGAAGTGCGTCAGT 167357 Query 16873 CAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACTCGTTCCTCGGA 16932 |||||| | ||| || || || || | ||||| | | |||| ||||| | Sbjct 167358 TAAAAATTCCTTCTCAATTTTTACAGCCTCTGTGATAATTTCAACTACTCTTTCCTTTGG 167417 Query 16933 CGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTC 16992 || | |||| ||||||||| |||| | ||||| || || | ||| | ||| ||||| Sbjct 167418 TGGCTTCTGTTCAAGATGTTTGTACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTC 167477 Query 16993 TCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCA 17052 ||| |||||||| || |||||||||||||| ||||| ||||| ||||| | ||| Sbjct 167478 TCTCGAAATAAGTTCATTTGAAAATGTCAACCCTGGCATTAATCCTCTCTTCTTAATCCA 167537 Query 17053 AAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAA 17112 |||||| || || || ||| |||||| || || ||||| | |||||| || || | Sbjct 167538 AAATATAGCTGCAAAGCTACCACTAAAGAAAATCCCTTCGACAGCTGCAAAAGCAATAAC 167597 Query 17113 TCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTG 17172 |||||| | | | || | ||| | ||||| || |||| || || || | Sbjct 167598 TCGTTCACCAAAGTTTGCATTCTTGCTGGATATCCAATTTAAAGCCCAGTCAGCCTTCTT 167657 Query 17173 CTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGAT 17232 ||| | || | || || || || || ||||| || | || | || | Sbjct 167658 CTTAACACATGGAAGTGTCTCAATTGCATTGAATAAGAAGTCACGCTGCTTTGCATCTCT 167717 Query 17233 TATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTG 17292 ||||| || || || | || |||||| || ||||||| || ||||| || || || Sbjct 167718 AATATAAGTTTCAATTAATATTGAGTACATCTCCGAGTGTACATTTTCCATAGCAATTTG 167777 Query 17293 AAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAG 17352 ||||| || ||| |||| ||||| | | |||||||||| ||| || || || Sbjct 167778 GAATCCATAGAAGAATCGAGCTTCTGGAACTTGAACTTCCTGACTGAAACGCTCAATTAA 167837 Query 17353 ATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAAT- 17411 ||| || || |||||||| || || || || || || |||| |||| || |||| Sbjct 167838 ATTCTCATTTACGATGCCATCAGATGCAGCAAAGAAAGCTAATACATGCGAGATAAAATG 167897 Query 17412 --ATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTC 17469 | | ||| | ||| | |||||| | | |||||| |||| ||| ||||| Sbjct 167898 ACGCTCTGAATCC---TTGAGATTGTTCCAGTCTTCCATATCTTTTGATAAATCGACTTC 167954 Query 17470 TTCGGGGGTCCAAAAACTAGCCACTGCCT 17498 ||| ||||| || || || | |||| Sbjct 167955 CTCGACTGTCCAGAAGCTGGCTTCAGCCT 167983 >seq726 Length=60972 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 119851 CCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTATCGTTTAA 119910 ||| | ||| ||||| || ||||| ||||| | ||||| | | | ||| ||||| Sbjct 19303 CCACATGCAGCCCACATAGCCGTTCGGATCTCTACCATCAAGATTAAAGCGATCATTTAA 19362 Query 119911 GTAGATA-CAGACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAG 119969 ||||| ||| | || || ||| || || | ||||||| | || ||||||| Sbjct 19363 ATAGATTGCAGTTTCAAGAC-CATCTTCTGGCGTTGCTGTCCATTCTAAAATCTTTTTAG 19421 Query 119970 CCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGG 120029 |||| ||||| || || ||||||||||||||||||| |||||||| ||||||| Sbjct 19422 CCCAATACATTCGCAAAAATCCATGCATTTTACCTTCTTTTGTCATTTGAATTTGTGCGC 19481 Query 120030 CGTTCCATAAGGGATCGTGTGT 120051 |||||||| |||||| || Sbjct 19482 TATTCCATAAATCATCGTGAGT 19503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517377235947000