Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq119 192 6e-44 seq726 87.8 2e-12 >seq119 Length=197918 Score = 192 bits (212), Expect = 6e-44 Identities = 551/837 (66%), Gaps = 24/837 (3%) Strand=Plus/Plus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 |||| || |||| ||| | |||||||||||| || || ||||| | || ||| || Sbjct 167159 TTTGATATTCACCAACCTTTCGTTCGAAGAAGTTTGTCTTGCCCTCAAGTGAAATAAATT 167218 Query 15972 CCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAG--AGTACCCCAGTTCCGTAAC 16029 ||||||| || ||||| | | | | | ||| ||| |||| ||| | Sbjct 167219 CCATAAATGAGAATGGATTTTTGGTATTATAGACTTTATCAAGT--CCCAATTCACCCAA 167276 Query 16030 TAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAG 16089 ||| ||| || ||||||||||| || ||| |||||| || ||||| || || | | Sbjct 167277 TAAATGATCAGCAACAAATTCTATGTACTGAGTCATTAAATCACAATTCATGCCCAACA- 167335 Query 16090 TCGTACC-GGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGA 16148 || || | ||||| || | |||||||||| | || || || || ||| | || | Sbjct 167336 TCTTAACTGGAAGTGCGTCAGTTAAAAATTCCTTCTCAATTTTTACAGCCTCTGTGATAA 167395 Query 16149 TATCGGTGGCTCGTGTTTCAGACGGTG---TATGGTTTAGGTGTTTAAACATTAGACACG 16205 | || ||| |||| |||| | || | || ||||| |||||| || | Sbjct 167396 TTTCAACTACTC---TTTCCTTTGGTGGCTTCTGTTCAAGATGTTTGTACATTAAGCATG 167452 Query 16206 CGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTG 16265 | ||||| | ||| |||||||||||||| |||||||| || ||||| || ||||||| Sbjct 167453 CAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAAAATGTCAACCCTG 167512 Query 16266 GCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATAC 16325 ||||| ||||| ||||| | ||| ||||| || ||||| || |||||| || | Sbjct 167513 GCATTAATCCTCTCTTCTTAATCCAAAATATAGCTGCAAAGCTACCACTAAAGAAAATCC 167572 Query 16326 CCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCC 16385 | || |||| ||||||||| || | |||||| | | | |||| || | |||| Sbjct 167573 CTTCGACAGCTGCAAAAGCAATAACTCGTTCACCAAAGTTTGCATTCTTGCTGGATATCC 167632 Query 16386 ATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACA 16445 | || |||| || || || | || | ||| | || || || || || || | Sbjct 167633 AATTTAAAGCCCAGTCAGCCTTCTTCTTAACACATGGAAGTGTCTCAATTGCATTGAATA 167692 Query 16446 A----TTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATT 16501 | | | || || || || || | ||||| || ||||| | || |||||| Sbjct 167693 AGAAGTCACGCTGCTT--TGCATCTC--TAATATAAGTTTCAATTAATATTGAGTACATC 167748 Query 16502 TCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATT 16561 || ||||||| || || || || || || |||||||||||| ||||||| || | | | Sbjct 167749 TCCGAGTGTACATTTTCCATAGCAATTTGGAATCCATAGAAGAATCGAGCTTCTGGAACT 167808 Query 16562 TGTACTTCC--ACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAG 16619 || |||||| || ||| || || | |||||||| ||||| || ||| ||||| Sbjct 167809 TGAACTTCCTGACTGAAA--CGCTCAATTAAATTCTCATTTACGATGCCATCAGATGCAG 167866 Query 16620 CAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAAT 16679 |||| || || |||| ||| || |||| || | | ||| | | ||| | Sbjct 167867 CAAAGAAAGCTAATACATGCGAGATAAAATGACGCTCTGAATCCTTGAGATTGTTCCAGT 167926 Query 16680 CTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736 ||| | |||||| |||| ||| ||||| || ||||| ||||| || | |||| Sbjct 167927 CTTCCATATCTTTTGATAAATCGACTTCCTCGACTGTCCAGAAGCTGGCTTCAGCCT 167983 >seq726 Length=60972 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 119102 TCCATTCCAGTAtttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGT 119161 ||||||| | || ||||||||||| ||||| || ||| | || ||||||||||| || | Sbjct 19401 TCCATTCTAAAATCTTTTTAGCCCAATACATTCGCAAAAATCCATGCATTTTACCTTCTT 19460 Query 119162 TAATCATCTGAAGTTGTGCGGTGTTCCATAGAGGATCGTGTGT 119204 | |||| |||| ||||||| | ||||||| | |||||| || Sbjct 19461 TTGTCATTTGAATTTGTGCGCTATTCCATAAATCATCGTGAGT 19503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511248030503000