Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq343 470 2e-127 seq119 293 3e-74 >seq343 Length=103200 Score = 470 bits (520), Expect = 2e-127 Identities = 1054/1575 (67%), Gaps = 35/1575 (2%) Strand=Plus/Plus Query 52829 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 52888 |||||||| || |||| || |||||||| ||||| || || | |||||||||||||| Sbjct 5041 GCGGGTTTTGTTCGTAAGTAATACATTCCAGTTTTCAGTCCCATTTTCCATCCGTAAAAA 5100 Query 52889 TGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 52948 || || |||| ||| |||| | || || |||| ||| ||||| | || |||||| Sbjct 5101 TGAATGGACGTTAATTTCCCATAATTGGGTTCAGCTACATGAATATTAAACGACTGACTT 5160 Query 52949 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 53008 || || || || ||||| | || |||| ||||| || ||||| | ||||||| Sbjct 5161 TGGTCTATAAAAGCTCCACGATCGGCAGACATTTGAATTTGTGTCTTGACGGAAATTTCC 5220 Query 53009 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG-----TATTCTGAATAG 53063 |||| |||||||| | || ||||| ||||||| |||| || |||| || | Sbjct 5221 CAAACCGTTTTATATATATTTTTTATATCATCTGGAA--TTTGCTCAATAGTCTGTATTG 5278 Query 53064 ATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 53123 | ||| || | | ||||| | ||||| || || |||| |||||| | || || | Sbjct 5279 AACCATTATTTGCAATAATTTTGTTCTTCATATCGTCATCCCATAAACCACGTTCAGTCA 5338 Query 53124 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 53183 || | | | ||||| ||||||| ||||||||||| ||| | || | ||| | | Sbjct 5339 AATCCTTGATAAGATGGTGATTAACAACTTGAAATTCACCACTGAGAACACGACGATTAT 5398 Query 53184 AAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 53243 ||| |||||| || || ||||| | ||||||||| |||||||| ||||||||||||| Sbjct 5399 AAACATTACTTGTGTAAGGTTCAAAGCTCTCATTATTACCCAAAATCTGAGCAGTTGATG 5458 Query 53244 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTT 53303 | |||||||| ||||| | || | ||||| ||||| | || | ||||| |||| Sbjct 5459 CTGTCGGCATTGGTGCAATTAAGAGTGAATTTCGGAGACCAAACTTTTTAATTTTTTCTT 5518 Query 53304 TTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAA 53363 |||||| |||||||| ||| | ||| | || ||||| | Sbjct 5519 TTAGAGCTTCCCAATCCCACAAATCGGTGGGAGTCTTATCCCACATATCATATTGTAATA 5578 Query 53364 TACCGTT--ACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 53421 ||| || || || || |||| | || || || |||||||| | || |||| Sbjct 5579 CACCTTTTGAC-ACCGGAC-ATCCATCGTAAGTCTCATATGGTCCCAATTGTTCTGCTAA 5636 Query 53422 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC 53481 |||||| || | ||| |||||||| |||||||| ||||| || || | | ||||| || Sbjct 5637 TTCACAGCTGGACTCCAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAAATT 5696 Query 53482 TTGTGCTTCCAGGCTA---TCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCC 53538 || ||||| | || ||| |||| | | | |||||| || ||||| ||||| Sbjct 5697 TTTCGCTTC---GTTAGATTCATATGGCATTCTCATCAAAATAAAAGCATCTGCCAATCC 5753 Query 53539 TTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGG 53598 |||||| ||||| || ||||| | |||||| || || || ||||||| || || Sbjct 5754 TTGAACTCCAATTCCAATAGGACGATGTCTAAAGTTTGACCGTTTAGCTTCTTCAACGGG 5813 Query 53599 ATAATAATTAATATCTATAATTTTATTGAGGT---TTCTGACAATTACTTTGACCACATC 53655 ||| ||||| | | ||||||||||| | | || |||| ||| |||| || || Sbjct 5814 ATAGTAATTTACGTTAATAATTTTATTCAAATTCCTTGTGACTATT--TTTG-TAACTTC 5870 Query 53656 CTTCAGTTTGAGAAAATCAAATTGTCCATCTATT-------ACAAACATGTTCAATGCAA 53708 ||||| |||| |||| ||| ||| | | || ||| |||||||| || || |||| Sbjct 5871 CTTCAATTTGTGAAAGTCATATTCT-CTTCGATTTTGTTTGACAAACATATTTAAAGCAA 5929 Query 53709 TAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGC 53768 | ||||| | ||||||||| || || |||| | | |||||||| ||| || || | Sbjct 5930 TTGATGCTAAATTACAAACTGCAACTTCATCCTTACTTGAATATTGTACTATTTCCGTAC 5989 Query 53769 AAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 53828 | | ||| ||| || || || | ||| |||||||| || ||| || | || Sbjct 5990 ATAAATTCGAACAACGTATTGTCCCAAGATTCTGTTGATTTGATTTCCGGTTGCATGAAT 6049 Query 53829 CCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGA 53888 ||||||| || || | || ||||||||||| | || | || || || || ||| | Sbjct 6050 CCTTATACAGCATATAAGGTGTACCAGTTTCTACTTGAGCCTCAATGATTGCGAACCACA 6109 Query 53889 CGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATC 53948 | | ||||||| | | | || || |||| ||| || | ||| | | Sbjct 6110 AATCTTGTGCCTTTACTTGACGAATATACCTTCCTTCTGCTTCATAGCCTTCATAAAGTT 6169 Query 53949 GTTCAAACTCGTCTCCCCAAAC-ATTGTCCAA-TCCAGGACATTCATCCGGACACATCAA 54006 |||| || ||| || || ||| || || |||| || |||||||| || Sbjct 6170 TCACAAATTC--CTCACCGTACGATTCAAAAAGACCGGGACTACTATTAGGACACATTAA 6227 Query 54007 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 54066 |||||| | | | | | || || ||| || | ||| |||||||| | || Sbjct 6228 TGACCACATTTCATTGTTTTCAACCCGACGCATGAACAAATCTGGAATCCACAATGCATA 6287 Query 54067 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 54126 ||| | ||||| | ||| ||| || ||||| ||||| || || | ||| || || | Sbjct 6288 AAACATGTCTCTAGCTCTGACTTCTTCTTTTCCAGTATTTTTCTTTAAATCCAGAAATTC 6347 Query 54127 CATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCC 54186 | ||||||| |||||| |||||||| ||||| | | | || || ||||| ||||| Sbjct 6348 AAAAATATCACCATGCCAAGGTTCCAAATATATTGCAAACGCGCCTGGACGTTTATTTCC 6407 Query 54187 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 54246 || || || | || | ||||| ||||| || ||||| |||||||||| || ||||| Sbjct 6408 ACCTTGGTCAACATAACGTGCGGTATTATTGTATACTCTTAACATTGGAACAAGGCCATT 6467 Query 54247 GGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAG 54306 || ||||| || || | ||||| |||| | || ||||| | || | Sbjct 6468 TGAAATCCCATTTGTACCAGCTATATATGTTCCTTTTGCTCGAATGCAATGAACATTAAC 6527 Query 54307 ACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 54366 ||| || || ||||| ||| |||||||||||| ||||||| |||||||| || || Sbjct 6528 ACCAATTCCACCTGCTGATTTGCTTATTAATGCGCATTGTTTTAATGTATCATAAATACC 6587 Query 54367 CTCTATACTATCATC 54381 ||| ||| |||||| Sbjct 6588 CTCAATAGAATCATC 6602 >seq119 Length=197918 Score = 293 bits (324), Expect = 3e-74 Identities = 570/833 (68%), Gaps = 13/833 (2%) Strand=Plus/Plus Query 23828 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACC 23887 |||||||||||| | ||||| |||||||| || | |||||| || || || || || Sbjct 167142 AGACATAACTCCACTCTTTTGATATTCACCAACCTTTCGTTCGAAGAAGTTTGTCTTGCC 167201 Query 23888 TTCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAA 23947 || | ||| ||| |||||| || | ||||||| | |||||||| | | | || Sbjct 167202 CTCAAGTGAAATAAATTCCATAAATGAGAATGGATTTTTGGTATTATAGACTTTATCAAG 167261 Query 23948 TCCCAATTCA-GAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCAC 24006 |||||||||| ||| ||| ||| || ||||| || || || |||| | |||| Sbjct 167262 TCCCAATTCACCCAATAAAT-GATCAGCAACAAATTCTATGTACTGAGTCATTAAATCAC 167320 Query 24007 AATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGA 24066 ||||||| || | | ||||||||||| || |||| | |||||| | ||||| | Sbjct 167321 AATTCATGCCCAACATCTTAACTGGAAGTGCGTCAGTTAAAAATTCCTTCTCAATTTTTA 167380 Query 24067 CCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAAT---AAATGTT 24123 | || ||||| ||||| |||| |||| | | ||||| | | | | ||||| Sbjct 167381 CAGCCTCTGTGATAATTTCAACTACTCTTTCCT---TTGGTGGCTTCTGTTCAAGATGTT 167437 Query 24124 TAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGG 24183 | |||| || ||||| || || | || || || |||||||| ||| | ||| || | Sbjct 167438 TGTACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTG 167497 Query 24184 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATC 24243 |||| || | || ||||||| || | ||| |||| ||||||||| | ||||| | Sbjct 167498 AAAATGTCAACCCTGGCATTAATCCTCTCTTCTTAATCCAAAATATAGCTGCAAAGCTAC 167557 Query 24244 CAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGC 24303 || ||||||||| ||||| || || ||||| ||||||| || ||| ||| | || Sbjct 167558 CACTAAAGAAAATCCCTTCGACAGCTGCAAAAGCAATAACTCGTTCACCAAAGTTTGCAT 167617 Query 24304 T-GTCATG--TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 24360 | | || |||||| ||| |||||| || |||||||| || ||||| || | ||||| Sbjct 167618 TCTTGCTGGATATCCAATTTAAAGCCCAGTCAGCCTTCTTCTTAACACATGGAAGTGTCT 167677 Query 24361 CTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAA 24420 | || ||||| || | ||| | || |||| ||| ||| || ||||| || | Sbjct 167678 CAATTGCATTGAATAAGAAGTCACGCTGCTTTGCATCTCTAATATAAGTTTCAATTAATA 167737 Query 24421 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAG 24480 ||||| ||||| || | ||||| || || ||||| ||||| ||||| ||| || Sbjct 167738 TTGAGTACATCTCCGAGTGTACATTTTCCATAGCAATTTGGAATCCATAGAAGAATCGAG 167797 Query 24481 CCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 24540 | || | || || ||||| || || || || |||||| ||||| || || || | Sbjct 167798 CTTCTGGAACTTGAACTTCCTGACTGAAACGCTCAATTAAATTCTCATTTACGATGCCAT 167857 Query 24541 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT-ATTTTTCGTCTGGTGTTAGT 24599 || || ||||| || || |||||||| ||||||| | | | | | | || Sbjct 167858 CAGATGCAGCAAAGAAAGCTAATACATGCGAGATAAAATGACGCTCTGAATCCT-TGAGA 167916 Query 24600 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 24652 || ||||| || | |||||||| |||| ||| ||||| || |||||||| || Sbjct 167917 TTGTTCCAGTCTTCCATATCTTTTGATAAATCGACTTCCTCGACTGTCCAGAA 167969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593528454942000