Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq442 91.5 2e-13 seq296 84.2 2e-11 >seq442 Length=86436 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| | ||||| || || || ||| |||| ||||| |||| | Sbjct 25216 ATGCAGATCTTCGTCAAAACCTTGACGGGTAAGACAATTACCCTCGAAGTCGA-GCCATC 25158 Query 40750 -GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | || ||| | |||||| || |||| || || || || || || | || | Sbjct 25157 TGACACGATTGAAAATG-TCAAGGCTAAGATTCAAGATAAGGAAGGAATTCCACCAGATC 25099 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | || || | |||| || || ||||| | || || | || || | | |||||||| Sbjct 25098 AACAGCGTTTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACATTGAGCGACTACA 25039 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||| || ||| | || || || ||||||||||| Sbjct 25038 ACATCCAAAAAGAGTCAACACTTCACTTAGTGTTGCGC 25001 >seq296 Length=113092 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 |||||||| ||||| || || | || || ||||||||||| | || || | ||||| | Sbjct 113083 ATGCAAATTTTCGTCAAGACTTTGACAGGAAAAACCATCACATTAGAAGTTG-AGCCATC 113025 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | ||| | |||| ||| || | |||||||| || || || | ||||| Sbjct 113024 AGACACAATTGAAAATGTAAAGGCAAAGATCCAAGACAAAGAAGGAATTCCACCAGACCA 112965 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || | |||| ||| || ||||| |||| || | || || | | ||||||||| Sbjct 112964 ACAGCGTTTGATCTTCGCAGGAAAACAATTGGAAGATGGTCGTACATTGAGCGACTACAA 112905 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||| || | || ||||| Sbjct 112904 TATCCAGAAAGAATCTACATTGCAT 112880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515051592754000