Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq726 212 9e-50 seq767 192 9e-44 seq296 131 3e-25 seq442 102 1e-16 >seq726 Length=60972 Score = 212 bits (234), Expect = 9e-50 Identities = 542/821 (66%), Gaps = 14/821 (2%) Strand=Plus/Plus Query 202858 CCACATACATCCAACATATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAA 202917 |||||| || || ||||| || || ||||| | ||||| | | | | ||||||||| Sbjct 19303 CCACATGCAGCCCACATAGCCGTTCGGATCTCTACCATCAAGATTAAAGCGATCATTTAA 19362 Query 202918 ATNNNNNNNNNNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGC 202977 || | | |||||||| | | |||||||||||| || |||||||| Sbjct 19363 ATAGATTGCAGTTTCAAGACCATCTTCTGGCGTTGCTGTCCATTCTAAAATCTTTTTAGC 19422 Query 202978 CCAATACATTCTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGC 203037 ||||||||||| ||| |||||||||||||||| | | ||||||| |||||| Sbjct 19423 CCAATACATTCGCAAAAATCCATGCATTTTACCTTCTTTTGTCATTTGAATTTGTGCGCT 19482 Query 203038 ATTCCATAAATTGTCATGAGTTAATGCATTTTCAAGTTGATATAAACTATATATATGTTT 203097 ||||||||||| || |||||| ||| | ||||| || | |||| | || | Sbjct 19483 ATTCCATAAATCATCGTGAGTTTTTGCCTCTTCAAATTCTTTGCGTGTATACACATAATC 19542 Query 203098 TCTAGTATCATTTTTATGTTCATTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTAT 203157 | | || || || ||||||| |||||| || ||||||| || || |||| Sbjct 19543 ACGTTTGTCTTTACGGTGATCATTTAATGTTTTCATAGCCCAATCTGTAATTCCTTTTAG 19602 Query 203158 ATTATCGTAATTTTCATTATAATAACAAAAATTATCACATAGTTCTTTACGAATAATAGC 203217 ||| ||||||| || ||||||| ||||||||||||||| | |||| ||| | ||| || Sbjct 19603 ATTGTCGTAATCTTTATTATAAAAACAAAAATTATCACTCAATTCTCGACGTACAATTGC 19662 Query 203218 TTCTTCACAAAAAACTTCTACCGATTTAGGA-TATAATTTTTTATATTTGTTAATTTCTA 203276 |||||||||||| | || | || | ||| | | | |||||||| || | ||| | Sbjct 19663 TTCTTCACAAAAGGCATC-AACGCTGCTGGAGGCTGAACTCTTATATTTTTTGACTTCAA 19721 Query 203277 ATATTATTCTTTGAGTTGAAATTTGACCAAAATGTATCCATGGTGATAAATTACTTATTG 203336 || | |||| | ||||||||| |||| | | || |||||||| | Sbjct 19722 TGATGGAGCGTTGAACAGCGATTTGACCATAATGGAAATAAGGCGATAAATTTGACAAAA 19781 Query 203337 CATTAGCATTTGGATCATTTCtttttttagcataatcttttaatctattttgtataaata 203396 |||| |||| ||||||| ||| | || ||| |||||||| || ||| || Sbjct 19782 CATTTAGGGTTGGGTCATTTCGTTTATCGCCAAAATTTTTTAATCGCTTCATTATGAAAC 19841 Query 203397 tatctaatattttaaatgcatattttGTA-CCAGATTTTGCCCAAGAAACAGGTTTAACA 203455 | || | || | || |||| || | || || | || ||| ||| |||| ||| Sbjct 19842 TGTCAACCATGTCAATGGCAT-TTCTATATCCTGGCTTAATCCATTCAACTGGTTCCACA 19900 Query 203456 TTTCTATCAATATTTAATGATTGTTCTGCttttttccaattatta---ttt-----attt 203507 ||| ||||| || ||||||| | | ||||||| | || | | | | Sbjct 19901 GATCTGTCAATTTTCAATGATTCTAAAAGATCCTTCCAATCAATAGACTCTGGACGAAAT 19960 Query 203508 taat-atatgtattataagtatgtttaataataggtataaattCAGTTAAATATTCTGAT 203566 ||| | | |||| | ||||||||| | ||| |||||| |||||||||||| Sbjct 19961 GAATCTTCAGGCTTATGTGGATGTTTAATGACTGGTGGAAATTCTGTTAAATATTCTCCA 20020 Query 203567 AATTTATAATTTATTTTATTTCTAATGGTTTTTGCAGAATATTCTAATTTATTACTAGCA 203626 | || ||| |||||||| | || || || | |||||| |||| | ||| Sbjct 20021 AGCTTGCTATTAATTTTATTACGGATTGTACGAGCTGCATATTCCTGCTTATCAGAAGCT 20080 Query 203627 ATCCAACATGGTACAATATTATGTGAATCAACTTG-ATAAA 203666 ||||| ||||||||| ||||| | ||||||||| ||||| Sbjct 20081 ATCCATATTGGTACAATGTTATGAGCATCAACTTGTATAAA 20121 >seq767 Length=55330 Score = 192 bits (212), Expect = 9e-44 Identities = 434/649 (67%), Gaps = 5/649 (1%) Strand=Plus/Minus Query 205312 ACTTGTCtttttatttttaattttGGAAATGGGTTTGGTGTACGTTCTAATTGttttttt 205371 ||||| | || ||||| || | ||| ||||| ||| ||||||| | ||| | ||| Sbjct 38044 ACTTGACGCTTGATTTTCAACTGTGGGAATGGACGTGGCTTACGTTCGAGTTGCTCTTTC 37985 Query 205372 AATCCATTAATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATAT 205431 ||| | | | ||||| || ||||| |||| |||| | |||||| ||| ||| Sbjct 37984 AATGGCTCAGTGTGATTCGTGTAAATATGAGCATCGCCAAAAGTATGAACAAAATCACCA 37925 Query 205432 GGTTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTA 205491 || || ||||| || | ||| |||||||| || |||||||| ||| |||| ||| Sbjct 37924 GGCTTCAAATTTGTAACATGAGCAATCATGTACGTCAATAAGGCATACGATGCAATATTG 37865 Query 205492 AATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTA 205551 || || || || | ||||||||||||||||||||| || | ||| || | | ||| | Sbjct 37864 AAAGGAACTCCAAGACCCATATCAGCTGATCTTTGGTATAATTGGCAGCTCA---ATTCA 37808 Query 205552 TTATTAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACA 205611 |||| |||| |||||| || | ||| ||||| ||||| | |||| | | || Sbjct 37807 CCATTAGCGACATAAAATTGAACGAGACAGTGACATGGTGGAAGTGCCATTTGTGGAATG 37748 Query 205612 TCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttatttta 205671 || | |||||||| || | ||||| ||| | | | || || ||| || Sbjct 37747 TCCACTGGATTCCATGCGCTCAATATAATACGACGATCATTTGGATTGGCTTTGATGCGT 37688 Query 205672 tttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATC-CATATCAAT 205730 | || | || ||||||| |||| |||||| | ||| | ||| ||| | | Sbjct 37687 TCAATGACATCCTTTAATTGGTCAATTCCTTGGCCTTCATATTCATCATCGCATGT-TTT 37629 Query 205731 ATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTT 205790 |||||| ||||||||||| ||||| ||||| |||||||||||||| |||||||| ||| Sbjct 37628 ATATTTGGCACCAAAATGTCGCCACTGAAATCCATAAACTGGACCCAAATCACCAACTTG 37569 Query 205791 TCTATCATTAAAACCACGtttttttatatattttaatgatccattttcatcccaaatatg 205850 | ||||| |||||| | | | ||| | | ||| | |||||||| | Sbjct 37568 ACGATCATGAAAACCGGATGCATCAAGGAATTCACGCGTACTGTTTCCGTCCCAAATTTT 37509 Query 205851 gattcctttattttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTC 205910 || || | ||| | || | || || ||||| || ||||||| | || Sbjct 37508 TATATTCTTCGCCTGTAGCAATTTAGCATCTGTGGATCCTTTTACGAACCATAGAAGCTC 37449 Query 205911 TTCAACAATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAAT 205959 |||| ||| ||||| |||||| | | ||| ||||||| ||||||||| Sbjct 37448 TTCAGCAACTCCTCGCCAAAATACTCGTTTGGTTGTAAGCAATGGAAAT 37400 >seq296 Length=113092 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| | ||||| ||||| || || |||| |||| || Sbjct 113083 ATGCAAATTTTCGTCAAGACTTTGACAGGAAAAACCATCACATTAGAAGTTGAGCCATCA 113024 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| |||| || || ||||| |||||||| || ||||| || ||| Sbjct 113023 GACACAATTGAAAATGTAAAGGCAAAGATCCAAGACAAAGAAGGAATTCCACCAGACCAA 112964 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | || || |||||||||||||| || ||| |||| ||||| || || ||| Sbjct 112963 CAGCGTTTGATCTTCGCAGGAAAACAATTGGAAGATGGTCGTACATTGAGCGACTACAAT 112904 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || || |||||||| || |||||||||||| | ||| | || || || Sbjct 112903 ATCCAGAAAGAATCTACATTGCATTTGGTTCTTCGTCTTCGTGGAGG 112857 >seq442 Length=86436 Score = 102 bits (112), Expect = 1e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || ||||||||||| ||||| || ||||| |||||||| | | || ||||| |||||| Sbjct 25132 AAGATTCAAGATAAGGAAGGAATTCCACCAGATCAACAGCGTTTGATCTTTGCTGGAAAA 25073 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 |||||||| ||| |||| ||||| || || || || |||||||| ||||| | || Sbjct 25072 CAATTAGAAGATGGTCGTACATTGAGCGACTACAACATCCAAAAAGAGTCAACACTTCAC 25013 Query 124743 TTGGTTTTACGTTTACGAGGTGGT 124766 || || || || | || |||||| Sbjct 25012 TTAGTGTTGCGCCTTCGTGGTGGT 24989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755210240720000