Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07]
26,025 sequences; 213,462,749 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq726 212 9e-50
seq767 192 9e-44
seq296 131 3e-25
seq442 102 1e-16
>seq726
Length=60972
Score = 212 bits (234), Expect = 9e-50
Identities = 542/821 (66%), Gaps = 14/821 (2%)
Strand=Plus/Plus
Query 202858 CCACATACATCCAACATATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAA 202917
|||||| || || ||||| || || ||||| | ||||| | | | | |||||||||
Sbjct 19303 CCACATGCAGCCCACATAGCCGTTCGGATCTCTACCATCAAGATTAAAGCGATCATTTAA 19362
Query 202918 ATNNNNNNNNNNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGC 202977
|| | | |||||||| | | |||||||||||| || ||||||||
Sbjct 19363 ATAGATTGCAGTTTCAAGACCATCTTCTGGCGTTGCTGTCCATTCTAAAATCTTTTTAGC 19422
Query 202978 CCAATACATTCTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGC 203037
||||||||||| ||| |||||||||||||||| | | ||||||| ||||||
Sbjct 19423 CCAATACATTCGCAAAAATCCATGCATTTTACCTTCTTTTGTCATTTGAATTTGTGCGCT 19482
Query 203038 ATTCCATAAATTGTCATGAGTTAATGCATTTTCAAGTTGATATAAACTATATATATGTTT 203097
||||||||||| || |||||| ||| | ||||| || | |||| | || |
Sbjct 19483 ATTCCATAAATCATCGTGAGTTTTTGCCTCTTCAAATTCTTTGCGTGTATACACATAATC 19542
Query 203098 TCTAGTATCATTTTTATGTTCATTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTAT 203157
| | || || || ||||||| |||||| || ||||||| || || ||||
Sbjct 19543 ACGTTTGTCTTTACGGTGATCATTTAATGTTTTCATAGCCCAATCTGTAATTCCTTTTAG 19602
Query 203158 ATTATCGTAATTTTCATTATAATAACAAAAATTATCACATAGTTCTTTACGAATAATAGC 203217
||| ||||||| || ||||||| ||||||||||||||| | |||| ||| | ||| ||
Sbjct 19603 ATTGTCGTAATCTTTATTATAAAAACAAAAATTATCACTCAATTCTCGACGTACAATTGC 19662
Query 203218 TTCTTCACAAAAAACTTCTACCGATTTAGGA-TATAATTTTTTATATTTGTTAATTTCTA 203276
|||||||||||| | || | || | ||| | | | |||||||| || | ||| |
Sbjct 19663 TTCTTCACAAAAGGCATC-AACGCTGCTGGAGGCTGAACTCTTATATTTTTTGACTTCAA 19721
Query 203277 ATATTATTCTTTGAGTTGAAATTTGACCAAAATGTATCCATGGTGATAAATTACTTATTG 203336
|| | |||| | ||||||||| |||| | | || |||||||| |
Sbjct 19722 TGATGGAGCGTTGAACAGCGATTTGACCATAATGGAAATAAGGCGATAAATTTGACAAAA 19781
Query 203337 CATTAGCATTTGGATCATTTCtttttttagcataatcttttaatctattttgtataaata 203396
|||| |||| ||||||| ||| | || ||| |||||||| || ||| ||
Sbjct 19782 CATTTAGGGTTGGGTCATTTCGTTTATCGCCAAAATTTTTTAATCGCTTCATTATGAAAC 19841
Query 203397 tatctaatattttaaatgcatattttGTA-CCAGATTTTGCCCAAGAAACAGGTTTAACA 203455
| || | || | || |||| || | || || | || ||| ||| |||| |||
Sbjct 19842 TGTCAACCATGTCAATGGCAT-TTCTATATCCTGGCTTAATCCATTCAACTGGTTCCACA 19900
Query 203456 TTTCTATCAATATTTAATGATTGTTCTGCttttttccaattatta---ttt-----attt 203507
||| ||||| || ||||||| | | ||||||| | || | | | |
Sbjct 19901 GATCTGTCAATTTTCAATGATTCTAAAAGATCCTTCCAATCAATAGACTCTGGACGAAAT 19960
Query 203508 taat-atatgtattataagtatgtttaataataggtataaattCAGTTAAATATTCTGAT 203566
||| | | |||| | ||||||||| | ||| |||||| ||||||||||||
Sbjct 19961 GAATCTTCAGGCTTATGTGGATGTTTAATGACTGGTGGAAATTCTGTTAAATATTCTCCA 20020
Query 203567 AATTTATAATTTATTTTATTTCTAATGGTTTTTGCAGAATATTCTAATTTATTACTAGCA 203626
| || ||| |||||||| | || || || | |||||| |||| | |||
Sbjct 20021 AGCTTGCTATTAATTTTATTACGGATTGTACGAGCTGCATATTCCTGCTTATCAGAAGCT 20080
Query 203627 ATCCAACATGGTACAATATTATGTGAATCAACTTG-ATAAA 203666
||||| ||||||||| ||||| | ||||||||| |||||
Sbjct 20081 ATCCATATTGGTACAATGTTATGAGCATCAACTTGTATAAA 20121
>seq767
Length=55330
Score = 192 bits (212), Expect = 9e-44
Identities = 434/649 (67%), Gaps = 5/649 (1%)
Strand=Plus/Minus
Query 205312 ACTTGTCtttttatttttaattttGGAAATGGGTTTGGTGTACGTTCTAATTGttttttt 205371
||||| | || ||||| || | ||| ||||| ||| ||||||| | ||| | |||
Sbjct 38044 ACTTGACGCTTGATTTTCAACTGTGGGAATGGACGTGGCTTACGTTCGAGTTGCTCTTTC 37985
Query 205372 AATCCATTAATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATAT 205431
||| | | | ||||| || ||||| |||| |||| | |||||| ||| |||
Sbjct 37984 AATGGCTCAGTGTGATTCGTGTAAATATGAGCATCGCCAAAAGTATGAACAAAATCACCA 37925
Query 205432 GGTTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTA 205491
|| || ||||| || | ||| |||||||| || |||||||| ||| |||| |||
Sbjct 37924 GGCTTCAAATTTGTAACATGAGCAATCATGTACGTCAATAAGGCATACGATGCAATATTG 37865
Query 205492 AATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTA 205551
|| || || || | ||||||||||||||||||||| || | ||| || | | ||| |
Sbjct 37864 AAAGGAACTCCAAGACCCATATCAGCTGATCTTTGGTATAATTGGCAGCTCA---ATTCA 37808
Query 205552 TTATTAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACA 205611
|||| |||| |||||| || | ||| ||||| ||||| | |||| | | ||
Sbjct 37807 CCATTAGCGACATAAAATTGAACGAGACAGTGACATGGTGGAAGTGCCATTTGTGGAATG 37748
Query 205612 TCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttatttta 205671
|| | |||||||| || | ||||| ||| | | | || || ||| ||
Sbjct 37747 TCCACTGGATTCCATGCGCTCAATATAATACGACGATCATTTGGATTGGCTTTGATGCGT 37688
Query 205672 tttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATC-CATATCAAT 205730
| || | || ||||||| |||| |||||| | ||| | ||| ||| | |
Sbjct 37687 TCAATGACATCCTTTAATTGGTCAATTCCTTGGCCTTCATATTCATCATCGCATGT-TTT 37629
Query 205731 ATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTT 205790
|||||| ||||||||||| ||||| ||||| |||||||||||||| |||||||| |||
Sbjct 37628 ATATTTGGCACCAAAATGTCGCCACTGAAATCCATAAACTGGACCCAAATCACCAACTTG 37569
Query 205791 TCTATCATTAAAACCACGtttttttatatattttaatgatccattttcatcccaaatatg 205850
| ||||| |||||| | | | ||| | | ||| | |||||||| |
Sbjct 37568 ACGATCATGAAAACCGGATGCATCAAGGAATTCACGCGTACTGTTTCCGTCCCAAATTTT 37509
Query 205851 gattcctttattttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTC 205910
|| || | ||| | || | || || ||||| || ||||||| | ||
Sbjct 37508 TATATTCTTCGCCTGTAGCAATTTAGCATCTGTGGATCCTTTTACGAACCATAGAAGCTC 37449
Query 205911 TTCAACAATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAAT 205959
|||| ||| ||||| |||||| | | ||| ||||||| |||||||||
Sbjct 37448 TTCAGCAACTCCTCGCCAAAATACTCGTTTGGTTGTAAGCAATGGAAAT 37400
>seq296
Length=113092
Score = 131 bits (144), Expect = 3e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| || | ||||| | ||||| ||||| || || |||| |||| ||
Sbjct 113083 ATGCAAATTTTCGTCAAGACTTTGACAGGAAAAACCATCACATTAGAAGTTGAGCCATCA 113024
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| |||||| ||| |||| || || ||||| |||||||| || ||||| || |||
Sbjct 113023 GACACAATTGAAAATGTAAAGGCAAAGATCCAAGACAAAGAAGGAATTCCACCAGACCAA 112964
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| | | || || |||||||||||||| || ||| |||| ||||| || || |||
Sbjct 112963 CAGCGTTTGATCTTCGCAGGAAAACAATTGGAAGATGGTCGTACATTGAGCGACTACAAT 112904
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765
|| || |||||||| || |||||||||||| | ||| | || || ||
Sbjct 112903 ATCCAGAAAGAATCTACATTGCATTTGGTTCTTCGTCTTCGTGGAGG 112857
>seq442
Length=86436
Score = 102 bits (112), Expect = 1e-16
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682
|| ||||||||||| ||||| || ||||| |||||||| | | || ||||| ||||||
Sbjct 25132 AAGATTCAAGATAAGGAAGGAATTCCACCAGATCAACAGCGTTTGATCTTTGCTGGAAAA 25073
Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742
|||||||| ||| |||| ||||| || || || || |||||||| ||||| | ||
Sbjct 25072 CAATTAGAAGATGGTCGTACATTGAGCGACTACAACATCCAAAAAGAGTCAACACTTCAC 25013
Query 124743 TTGGTTTTACGTTTACGAGGTGGT 124766
|| || || || | || ||||||
Sbjct 25012 TTAGTGTTGCGCCTTCGTGGTGGT 24989
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755210240720000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |