Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07]
26,025 sequences; 213,462,749 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq119 331 9e-86
>seq119
Length=197918
Score = 331 bits (366), Expect = 9e-86
Identities = 582/835 (70%), Gaps = 16/835 (2%)
Strand=Plus/Plus
Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988
||||||||| | ||||||||||||| ||| | ||| ||||| ||||| || ||
Sbjct 167143 GACATAACTCCACTCTTTTGATATTCACCAACCTTTCGTTCGAAGAAGTTTGTCTTGCCC 167202
Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT 16048
|| | ||||||| ||||||||| || |||||||| | | |||| |||||| |
Sbjct 167203 TCAAGTGAAATAAATTCCATAAATGAGAATGGATTTTTGGTATTATAGACTTTATCAAGT 167262
Query 16049 CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108
|||||||| |||||| ||| || ||||||||||| ||||| |||||||||||||
Sbjct 167263 CCCAATTCACCCAATAAATGATCAGCAACAAATTCTATGTACTGAGTCATTAAATCACAA 167322
Query 16109 TTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACC 16168
||||| || | | ||||| || | ||| || |||||||| | || || || || ||
Sbjct 167323 TTCATGCCCAACATCTTAACTGGAAGTGCGTCAGTTAAAAATTCCTTCTCAATTTTTACA 167382
Query 16169 GCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTAAT--AAG-TGTTTA 16225
|| || |||| || || ||||| || | || || || | ||| |||||
Sbjct 167383 GCCTCTGTGATAATTTCA---ACTACTCTTTCCTTTGGTGGCTTCTGTTCAAGATGTTTG 167439
Query 16226 AACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAA 16285
|||||| || ||||| |||| ||| | ||||||||| || || | || ||||||
Sbjct 167440 TACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAA 167499
Query 16286 AATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCA 16345
||||| | |||||||||| ||||| || ||||||||||||||||| ||||| ||||
Sbjct 167500 AATGTCAACCCTGGCATTAATCCTCTCTTCTTAATCCAAAATATAGCTGCAAAGCTACCA 167559
Query 16346 GAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttt 16405
|||||| || ||||| || || ||||| |||| | ||| ||||| | || |||
Sbjct 167560 CTAAAGAAAATCCCTTCGACAGCTGCAAAAGCAATAACTCGTTCACCAAAGTTTGCATTC 167619
Query 16406 ttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGT-TCTC 16464
|| || |||||| ||| |||||| | || || | |||||||| | | || ||||
Sbjct 167620 TTGCTGGATATCCAATTTAAAGCCCAGTCAGCCTTCTTCTTAACACA-TGGAAGTGTCTC 167678
Query 16465 TATTGCATTAAATAAATAAt-ttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTA 16523
|||||||| ||||| | | | |||||| |||| ||||||||| || |||| ||
Sbjct 167679 AATTGCATTGAATAAGAAGTCACGCTGCTTTGC-ATCTCTAATATAAGTTTCAATTAATA 167737
Query 16524 AACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAG 16583
||||| || || || | ||| ||||| || || || || ||||| ||| ||| ||
Sbjct 167738 TTGAGTACATCTCCGAGTGTACATTTTCCATAGCAATTTGGAATCCATAGAAGAATCGAG 167797
Query 16584 CTTCGGATATTTGTACTT-CAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCA 16642
|||| | | ||| |||| | || | ||| | || ||| || || || || || |||
Sbjct 167798 CTTCTGGAACTTGAACTTCCTGACTGAAA-CGCTCAATTAAATTCTCATTTACGATGCCA 167856
Query 16643 TCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC--TGAAA 16700
|| || ||||| || || | || || ||||||| || ||| ||| |
Sbjct 167857 TCAGATGCAGCAAAGAAAGCTAATACATGCGAGATAAAATGACGCTCTGAATCCTTGAGA 167916
Query 16701 GTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAA 16755
| || |||||| | |||||||||||||||||| || || || ||||| ||
Sbjct 167917 TTGTT--CCAGTCTTCCATATCTTTTGATAAATCGACTTCCTCGACTGTCCAGAA 167969
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462361539065000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |