Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq119 331 9e-86 >seq119 Length=197918 Score = 331 bits (366), Expect = 9e-86 Identities = 582/835 (70%), Gaps = 16/835 (2%) Strand=Plus/Plus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 ||||||||| | ||||||||||||| ||| | ||| ||||| ||||| || || Sbjct 167143 GACATAACTCCACTCTTTTGATATTCACCAACCTTTCGTTCGAAGAAGTTTGTCTTGCCC 167202 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT 16048 || | ||||||| ||||||||| || |||||||| | | |||| |||||| | Sbjct 167203 TCAAGTGAAATAAATTCCATAAATGAGAATGGATTTTTGGTATTATAGACTTTATCAAGT 167262 Query 16049 CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108 |||||||| |||||| ||| || ||||||||||| ||||| ||||||||||||| Sbjct 167263 CCCAATTCACCCAATAAATGATCAGCAACAAATTCTATGTACTGAGTCATTAAATCACAA 167322 Query 16109 TTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACC 16168 ||||| || | | ||||| || | ||| || |||||||| | || || || || || Sbjct 167323 TTCATGCCCAACATCTTAACTGGAAGTGCGTCAGTTAAAAATTCCTTCTCAATTTTTACA 167382 Query 16169 GCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTAAT--AAG-TGTTTA 16225 || || |||| || || ||||| || | || || || | ||| ||||| Sbjct 167383 GCCTCTGTGATAATTTCA---ACTACTCTTTCCTTTGGTGGCTTCTGTTCAAGATGTTTG 167439 Query 16226 AACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAA 16285 |||||| || ||||| |||| ||| | ||||||||| || || | || |||||| Sbjct 167440 TACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAA 167499 Query 16286 AATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCA 16345 ||||| | |||||||||| ||||| || ||||||||||||||||| ||||| |||| Sbjct 167500 AATGTCAACCCTGGCATTAATCCTCTCTTCTTAATCCAAAATATAGCTGCAAAGCTACCA 167559 Query 16346 GAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttt 16405 |||||| || ||||| || || ||||| |||| | ||| ||||| | || ||| Sbjct 167560 CTAAAGAAAATCCCTTCGACAGCTGCAAAAGCAATAACTCGTTCACCAAAGTTTGCATTC 167619 Query 16406 ttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGT-TCTC 16464 || || |||||| ||| |||||| | || || | |||||||| | | || |||| Sbjct 167620 TTGCTGGATATCCAATTTAAAGCCCAGTCAGCCTTCTTCTTAACACA-TGGAAGTGTCTC 167678 Query 16465 TATTGCATTAAATAAATAAt-ttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTA 16523 |||||||| ||||| | | | |||||| |||| ||||||||| || |||| || Sbjct 167679 AATTGCATTGAATAAGAAGTCACGCTGCTTTGC-ATCTCTAATATAAGTTTCAATTAATA 167737 Query 16524 AACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAG 16583 ||||| || || || | ||| ||||| || || || || ||||| ||| ||| || Sbjct 167738 TTGAGTACATCTCCGAGTGTACATTTTCCATAGCAATTTGGAATCCATAGAAGAATCGAG 167797 Query 16584 CTTCGGATATTTGTACTT-CAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCA 16642 |||| | | ||| |||| | || | ||| | || ||| || || || || || ||| Sbjct 167798 CTTCTGGAACTTGAACTTCCTGACTGAAA-CGCTCAATTAAATTCTCATTTACGATGCCA 167856 Query 16643 TCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC--TGAAA 16700 || || ||||| || || | || || ||||||| || ||| ||| | Sbjct 167857 TCAGATGCAGCAAAGAAAGCTAATACATGCGAGATAAAATGACGCTCTGAATCCTTGAGA 167916 Query 16701 GTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAA 16755 | || |||||| | |||||||||||||||||| || || || ||||| || Sbjct 167917 TTGTT--CCAGTCTTCCATATCTTTTGATAAATCGACTTCCTCGACTGTCCAGAA 167969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462361539065000