Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq119 334 7e-87 seq205 93.3 4e-14 >seq119 Length=197918 Score = 334 bits (370), Expect = 7e-87 Identities = 629/918 (69%), Gaps = 14/918 (2%) Strand=Plus/Plus Query 13828 ATTCAACTTTATAATATTCAATAAAAA------CTAAAAATCAACATCTAACGAAAAAAC 13881 ||||| ||||| || || |||| ||| ||| |||||| | ||||| | ||||| Sbjct 167069 ATTCA--TTTATGATGTTAAATAGAAATTATCACTAGAAATCAGCGTCTAATGTGAAAAC 167126 Query 13882 ATTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAA 13941 | || | |||| ||||| || | ||||||||||||| ||| || ||| || Sbjct 167127 TTGTTCTTGACGACTAGACATAACTCCACTCTTTTGATATTCACCAACCTTTCGTTCGAA 167186 Query 13942 GAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACAT 14001 |||||| || || || || ||||| ||| ||||||||| ||||||||| | | | Sbjct 167187 GAAGTTTGTCTTGCCCTCAAGTGAAATAAATTCCATAAATGAGAATGGATTTTTGGTATT 167246 Query 14002 AAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTG 14061 | | ||||||||| || | ||| | ||| ||| |||| || || || || || Sbjct 167247 ATAGACTTTATCAAGTCCCAATTCACCCAATAAATGATCAGCAACAAATTCTATGTACTG 167306 Query 14062 AGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTC 14121 || |||||||||||||||||| || | | || || |||| | | ||||||||||| Sbjct 167307 AGTCATTAAATCACAATTCATGCCCAACATCTTAACTGGAAGTGCGTCAGTTAAAAATTC 167366 Query 14122 TTTTTCTATAGACACAGCCTCGTTTATAATAATCGTAATAAT--TTCATTAGAAGGAGGA 14179 || || || |||||||| | ||||| || | || | ||| || | || Sbjct 167367 CTTCTCAATTTTTACAGCCTCTGTGATAATT-TCA-ACTACTCTTTCCTTTGGTGGCTTC 167424 Query 14180 TATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTA 14239 | || |||||||| | ||||| || ||||| |||| |||||| || || ||||| | Sbjct 167425 TGTTCAAGATGTTTGTACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAA 167484 Query 14240 ATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATT 14299 |||||||| ||||||||||| || |||||||| ||||||| || || | ||||||||| Sbjct 167485 ATAAGTTCATTTGAAAATGTCAACCCTGGCATTAATCCTCTCTTCTTAATCCAAAATATA 167544 Query 14300 GCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCT 14359 || || || || |||||| || || || || || ||||| || || | |||||| Sbjct 167545 GCTGCAAAGCTACCACTAAAGAAAATCCCTTCGACAGCTGCAAAAGCAATAACTCGTTCA 167604 Query 14360 CCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATA 14419 ||||| ||| || ||| | |||||||| ||| |||||| |||| || || |||| | Sbjct 167605 CCAAAGTTTGCATTCTTGCTGGATATCCAATTTAAAGCCCAGTCAGCCTTCTTCTTAACA 167664 Query 14420 AAATCCATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTAT 14479 | | ||| ||||| ||||| ||||| || || || | | | ||| || Sbjct 167665 CATGGAAGTGTCTCAATTGCATTGAATAAGAAGTCACGCTGCTTTGCATCTCTAATATAA 167724 Query 14480 GTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCA 14539 || ||||| | || ||||| || ||||||| ||||||||||| || || || ||| Sbjct 167725 GTTTCAATTAATATTGAGTACATCTCCGAGTGTACATTTTCCATAGCAATTTGGAATCCA 167784 Query 14540 TAAAAACATCTAGCTTCTGACCATTGTACCT-CTGAGTAAAATCTTTCGGCCAAATTTTC 14598 || || ||| |||||||| ||| || | |||| | ||| | || ||||| || Sbjct 167785 TAGAAGAATCGAGCTTCTGGAACTTGAACTTCCTGACTGAAA-CGCTCAATTAAATTCTC 167843 Query 14599 ATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTC 14658 ||| || || |||||| || ||||| || || |||| | ||||| | |||| Sbjct 167844 ATTTACGATGCCATCAGATGCAGCAAAGAAAGCTAATACATGCGAGATAAAATGACGCTC 167903 Query 14659 TTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGT 14718 | || |||| || ||||| || | | ||| || || | ||| ||||| || ||||| Sbjct 167904 TGAATCCTTGAGATTGTTCCAGTCTTCCATATCTTTTGATAAATCGACTTCCTCGACTGT 167963 Query 14719 CCAAAAACTAGCAACAGC 14736 ||| || || || |||| Sbjct 167964 CCAGAAGCTGGCTTCAGC 167981 >seq205 Length=143123 Score = 93.3 bits (102), Expect = 4e-14 Identities = 126/173 (73%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 14209 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 14268 ||| |||| ||| || || ||||||| ||| |||||||||||||| || ||||| || Sbjct 86382 AAAGTCACGATGTAGTCCTTCATCTCGTGAAATGAGTTCGTTTGAAAAAGTCAATCCAGG 86323 Query 14269 CATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCG-GAAAAGAATATTC 14327 ||| | |||||| ||||||| | |||| ||||| || || || | |||| ||||| Sbjct 86322 CATTAGTCCTCGCTTTTTTAGCTAAAAGATTGCTGCAAAGCTTCTGCTAAAAAAATATAA 86263 Query 14328 CCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14380 || || || ||||| || || | || ||| || || ||| ||||| ||| Sbjct 86262 TTTCTACAGCGGCAAATGCAATAATTCTTTCACCCAA-TCTGCCTTTTTCTTC 86211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482188686947000