Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07]
26,025 sequences; 213,462,749 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq343 347 1e-90
seq119 210 2e-49
seq296 120 3e-22
>seq343
Length=103200
Score = 347 bits (384), Expect = 1e-90
Identities = 1049/1602 (65%), Gaps = 32/1602 (2%)
Strand=Plus/Plus
Query 22103 GTCTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATG 22162
|| ||||| || |||||||| || || ||||| || ||||| || || | ||||||||
Sbjct 5008 GTTTTGTCAACAGTAAACTGAATAGCATTTGCAGCGGGTTTTGTTCGTAAGTAATACATT 5067
Query 22163 CCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTC 22222
|| || ||||| ||||| ||||| |||||||||| || ||||| ||||| |||||| |
Sbjct 5068 CCAGTTTTCAGTCCCATTTTCCATCCGTAAAAATGAATGGACGTTAATTTCCCATAATTG 5127
Query 22223 GG--CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGG 22280
|| || | |||| | | || ||||||||||| || || ||||| ||||| |||||||
Sbjct 5128 GGTTCAGCTACATGAATA--TTAAACGACTGACTTTGGTCTATAAAAGCTCCACGATCGG 5185
Query 22281 CGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGA 22340
| | ||| | || ||| | || |||||||| || || || || | | | |
Sbjct 5186 CAGACATTTGAATTTGTGTCTTGACGGAAATTTCCCAAACCGTTTTATATATATTTTTTA 5245
Query 22341 TCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTT 22400
| || || || || || |||| | || || ||||| || | || | || |
Sbjct 5246 TATCATCTGGAATTTGCTCAATAGTCTGTATTGAACCATTATT-TGCA--ATAATTTTGT 5302
Query 22401 TAATCGTATCGTT---CCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCA 22457
| || |||||| ||| ||||| | |||||||| |||| ||||| | || |
Sbjct 5303 TCTTCATATCGTCATCCCATAAACCACGTTCAGTCAAATCCTTGATAAGATGGTGATTAA 5362
Query 22458 CCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGA 22517
| |||||||| || || | || || || | |||| || |||| | ||||| |
Sbjct 5363 CAACTTGAAATTCACCACTGAGAACACGACGATTATAAACATTACTTGTGTAAGGTTC-A 5421
Query 22518 AAGAT-TCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGT 22576
||| | ||||| || |||| |||||||| || || || |||||||| || || | |
Sbjct 5422 AAGCTCTCATTATTACCCAAAATCTGAGCAGTTGATGCTGTCGGCATTGGTGCAATTAAG 5481
Query 22577 AGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTA-CTCTT-GAGCATCGACCAGTCCCACA 22634
|| || |||| | || |||| |||||| || || |||| || ||| |||||||
Sbjct 5482 AGTGAATTTCGGAGACCAAACTTTTTAATTTTTTCTTTTAGAGCTTC--CCAATCCCACA 5539
Query 22635 GATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGC 22694
||||| || ||| || ||||||||||| ||||| || || || | |||| |
Sbjct 5540 AATCGGTGGGAGTC---TTATCCCACATATCATATTGTAATACACCTTTTGACACCGGAC 5596
Query 22695 TGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACG 22754
|| ||||| || || || || || || | || | ||| ||||| | |||||| |
Sbjct 5597 ATCCATCGTAAGTCTCATATGGTCCCAATTGTTCTGCTAATTCACAGCTGGACTCCAATG 5656
Query 22755 CGCCGTAATATATAGTCTCGAAGATTTTCTTG--TTCAATTCGGCGGCGGCGACGCTTTC 22812
| || ||||| || || || || |||| ||| || |||| || | || |||
Sbjct 5657 CACCATAATAAATTGTTTCAAATATTTG-TTGATTTAAATTTTTCG-CTTCGTTAGATTC 5714
Query 22813 GTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGG 22872
|| ||||| | ||||| | || || || |||| || ||||| || || || || ||
Sbjct 5715 ATATGGCATTCTCATCAAAATAAAAGCATCTGCCAATCCTTGAACTCCAATTCCAATAGG 5774
Query 22873 TCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGT 22932
|| | | | | || ||| ||| || || | ||||| |||| | || |
Sbjct 5775 ACGATGTCTAAAGTTTGACCGTTTAGCTTCTTCAACGGGATAGTAATTTACGTTAATAAT 5834
Query 22933 TCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAAC 22992
| | ||||| || || || || ||||| || | | |||||| || |
Sbjct 5835 TTTATTCAAATTCCTTGTGACTATTTTTGTAACTTCCTTCAATTTGTGAAAGTCATATTC 5894
Query 22993 GCC-CGATT--GTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCAC 23049
| ||||| || |||||| | || | || || || || | ||| || || || ||
Sbjct 5895 TCTTCGATTTTGTTTGACAAACATATTTAAAGCAATTGATGCTAAATTACAAACTGCAAC 5954
Query 23050 CTCGTCTTTGGACGTG--TACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107
|| || || || || || | ||| ||||| ||||||| ||| ||| ||| ||
Sbjct 5955 TTCATCCTT--ACTTGAATATTGTACTATTTCCGTACATAAATTCGAACAACGTATTGTC 6012
Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167
|| | ||| || || ||| || ||||| |||||||| || ||||| || || ||
Sbjct 6013 CCAAGATTCTGTTGATTTGATTTCCGGTTGCATGAATCCTTATACAGCATATAAGGTGTA 6072
Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGC 23227
|| || || || || | ||| ||||| || ||||| | || || | || | ||
Sbjct 6073 CCAGTTTCTACTTGAGCCTCAATGATTGCGAACCACAAATCTTGTGCCTTTACTTGACGA 6132
Query 23228 ACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAG 23287
| ||||| |||||| | || || || || | ||||||| ||||||| |
Sbjct 6133 ATATACCTTCCTTCTGCTTCATAGCCTTCATAAAGTTTCACAAATTCCTCACCGTACGAT 6192
Query 23288 TCGGCCAGGCCGGG-CGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAAC 23346
|| || ||||| | | | | |||||||| | ||||||| | ||||||||
Sbjct 6193 TCAAAAAGACCGGGACTACTAT-TAGGACACATTAATGACCACATTTCATTGTTTTCAAC 6251
Query 23347 GCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTC 23406
|| | ||| || | ||| || ||||| | || || |||| || | || | || ||
Sbjct 6252 CCGACGCATGAACAAATCTGGAATCCACAATGCATAAAACATGTCTCTAGCTCTGACTTC 6311
Query 23407 CTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTC 23466
||||| || || || || || ||||||| ||| || || | || ||||||| || ||
Sbjct 6312 TTCTTTTCCAGTATTTTTCTTTAAATCCAGAAATTCAAAAATATCACCATGCCAAGGTTC 6371
Query 23467 GAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGT 23526
| || | ||||||||||| || | ||||| || || || || || ||||| || ||
Sbjct 6372 CAAATATATTGCAAACGCGCCTGGACGTTTATTTCCACCTTGGTCAACATAACGTGCGGT 6431
Query 23527 GTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCAC 23586
|| ||||| ||||||| ||| || || || || || || || | || || |
Sbjct 6432 ATTATTGTATACTCTTAACATTGGAACAAGGCCATTTGAAATCCCATTTGTACCAGCTAT 6491
Query 23587 ACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGA 23646
| | ||||||||||||| | ||||| | | ||| || || || | |||||
Sbjct 6492 ATATGTTCCTTTTGCTCGAATGCAATGAACATTAACACCAATTCCACCTGCTGATTTGCT 6551
Query 23647 TATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGAT 23688
||| | ||||||||||| | || || || || ||||| ||
Sbjct 6552 TATTAATGCGCATTGTTTTAATGTATCATAAATACCCTCAAT 6593
>seq119
Length=197918
Score = 210 bits (232), Expect = 2e-49
Identities = 552/836 (66%), Gaps = 20/836 (2%)
Strand=Plus/Minus
Query 57589 AGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATT 57648
|||| ||||| || ||||| ||||| ||||| || | || || ||| || || |
Sbjct 167983 AGGCTGAAGCCAGCTTCTGGACAGTCGAGGAAGTCGATTTATCAAAAGATATGGAAGACT 167924
Query 57649 GGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCG 57708
|| | ||||| || || ||| | ||||||| || || || || || || || |
Sbjct 167923 GGAACAATCTCAAGGATTCAGAGCGTCATTTTATCTCGCATGTATTAGCTTTCTTTGCTG 167864
Query 57709 CATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCA--CAAGAAGTGCAAGT 57766
|||| ||||| || || || |||||||| | || | ||||| || ||||| |||||
Sbjct 167863 CATCTGATGGCATCGTAAATGAGAATTTAATTGAGCG--TTTCAGTCAGGAAGTTCAAGT 167806
Query 57767 GACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAAT 57826
| || || ||| ||| || ||||| ||| | || || ||||| || || || || ||
Sbjct 167805 TCCAGAAGCTCGATTCTTCTATGGATTCCAAATTGCTATGGAAAATGTACACTCGGAGAT 167746
Query 57827 GTATTCGCTACTCATCGATACGTACGTGAAGGA--CAACGACGAGAAACGTAGACTG--- 57881
||| || || | || || || || | | || ||| || | ||| ||||
Sbjct 167745 GTACTCAATATTAATTGAAACTTATATTAGAGATGCAA-----AGCAGCGT-GACTTCTT 167692
Query 57882 -TTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATG 57940
||||| || || || ||| | || | |||||||| || ||| | | || ||
Sbjct 167691 ATTCAATGCAATTGAGACACTTCCATGTGTTAAGAAGAAGGCTGACTGGGCTTTAAATTG 167632
Query 57941 GATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGG 58000
|||| ||| | || | || | || | | || || || || || ||||||||
Sbjct 167631 GATATCCAGCAAGAATGCAAACTTTGGTGAACGAGTTATTGCTTTTGCAGCTGTCGAAGG 167572
Query 58001 TATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCC 58060
|| |||||| || |||||||| || ||||||||||| ||||| | || | |||||
Sbjct 167571 GATTTTCTTTAGTGGTAGCTTTGCAGCTATATTTTGGATTAAGAAGAGAGGATTAATGCC 167512
Query 58061 CGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGC 58120
|| |||| ||| || || | || ||| | ||||| || || ||| ||| |||||
Sbjct 167511 AGGGTTGACATTTTCAAATGAACTTATTTCGAGAGACGAAGGACTTCATCGTGACTTTGC 167452
Query 58121 GTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTAT 58180
||| |||||||| || ||| | || || | ||| | | | || |||||
Sbjct 167451 ATGCTTAATGTACAAACATCTTGAACAGAAGCCACCAAAGGAAAGAGTAGTTGAAATTAT 167392
Query 58181 CACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCT 58240
||| ||||| || || || || || ||| | || || || || || || ||| |
Sbjct 167391 CACAGAGGCTGTAAAAATTGAGAAGGAATTTTTAACTGACGCACTTCCAGTTAAGATGTT 167332
Query 58241 CGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCT 58300
|| ||||| |||||| ||| | ||||||| || |||||||| || | |||
Sbjct 167331 GGGCATGAATTGTGATTTAATGACTCAGTACATAGAATTTGTTGCTGATCATTTATTGGG 167272
Query 58301 CGAACT--GATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTG 58358
||| | || | || | ||| || || || |||||||| || |||||| | |
Sbjct 167271 TGAATTGGGACTTGATAAAGTC--TATAATACCAAAAATCCATTCTCATTTATGGAATTT 167214
Query 58359 ATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAA 58414
|| || || ||||||||||||||||| |||||| ||| ||| | |||||||||||
Sbjct 167213 ATTTCACTTGAGGGCAAGACAAACTTCTTCGAACGAAAGGTTGGTGAATATCAAAA 167158
>seq296
Length=113092
Score = 120 bits (132), Expect = 3e-22
Identities = 157/215 (73%), Gaps = 2/215 (1%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
||||||||||||||| |||||| ||||||| ||||| ||||| | || ||||| || ||
Sbjct 113084 CATGCAAATTTTCGTCAAGACTTTGACAGGAAAAACCATCACATTAGAAGTTGAGCCATC 113025
Query 31252 CGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310
|||| | |||| || || || || || ||||| ||||| | || || ||||
Sbjct 113024 AGACACAATTGAAAATGTAAAGGCAAAG-ATCCAAGACAAAGAAGGAATTCCACCAGACC 112966
Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370
| |||||| | || ||||| || ||||| |||||||| | || ||||||| || |
Sbjct 112965 AACAGCGTTTGATCTTCGCAGGAAAACAATTGGAAGATGGTCGTACATTGAGCGACTACA 112906
Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405
| || || |||||||| || | ||| |||| |||
Sbjct 112905 ATATCCAGAAAGAATCTACATTGCATTTGGTTCTT 112871
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445621386618000
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