Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq343 347 1e-90 seq119 210 2e-49 seq296 120 3e-22 >seq343 Length=103200 Score = 347 bits (384), Expect = 1e-90 Identities = 1049/1602 (65%), Gaps = 32/1602 (2%) Strand=Plus/Plus Query 22103 GTCTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATG 22162 || ||||| || |||||||| || || ||||| || ||||| || || | |||||||| Sbjct 5008 GTTTTGTCAACAGTAAACTGAATAGCATTTGCAGCGGGTTTTGTTCGTAAGTAATACATT 5067 Query 22163 CCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTC 22222 || || ||||| ||||| ||||| |||||||||| || ||||| ||||| |||||| | Sbjct 5068 CCAGTTTTCAGTCCCATTTTCCATCCGTAAAAATGAATGGACGTTAATTTCCCATAATTG 5127 Query 22223 GG--CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGG 22280 || || | |||| | | || ||||||||||| || || ||||| ||||| ||||||| Sbjct 5128 GGTTCAGCTACATGAATA--TTAAACGACTGACTTTGGTCTATAAAAGCTCCACGATCGG 5185 Query 22281 CGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGA 22340 | | ||| | || ||| | || |||||||| || || || || | | | | Sbjct 5186 CAGACATTTGAATTTGTGTCTTGACGGAAATTTCCCAAACCGTTTTATATATATTTTTTA 5245 Query 22341 TCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTT 22400 | || || || || || |||| | || || ||||| || | || | || | Sbjct 5246 TATCATCTGGAATTTGCTCAATAGTCTGTATTGAACCATTATT-TGCA--ATAATTTTGT 5302 Query 22401 TAATCGTATCGTT---CCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCA 22457 | || |||||| ||| ||||| | |||||||| |||| ||||| | || | Sbjct 5303 TCTTCATATCGTCATCCCATAAACCACGTTCAGTCAAATCCTTGATAAGATGGTGATTAA 5362 Query 22458 CCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGA 22517 | |||||||| || || | || || || | |||| || |||| | ||||| | Sbjct 5363 CAACTTGAAATTCACCACTGAGAACACGACGATTATAAACATTACTTGTGTAAGGTTC-A 5421 Query 22518 AAGAT-TCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGT 22576 ||| | ||||| || |||| |||||||| || || || |||||||| || || | | Sbjct 5422 AAGCTCTCATTATTACCCAAAATCTGAGCAGTTGATGCTGTCGGCATTGGTGCAATTAAG 5481 Query 22577 AGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTA-CTCTT-GAGCATCGACCAGTCCCACA 22634 || || |||| | || |||| |||||| || || |||| || ||| ||||||| Sbjct 5482 AGTGAATTTCGGAGACCAAACTTTTTAATTTTTTCTTTTAGAGCTTC--CCAATCCCACA 5539 Query 22635 GATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGC 22694 ||||| || ||| || ||||||||||| ||||| || || || | |||| | Sbjct 5540 AATCGGTGGGAGTC---TTATCCCACATATCATATTGTAATACACCTTTTGACACCGGAC 5596 Query 22695 TGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACG 22754 || ||||| || || || || || || | || | ||| ||||| | |||||| | Sbjct 5597 ATCCATCGTAAGTCTCATATGGTCCCAATTGTTCTGCTAATTCACAGCTGGACTCCAATG 5656 Query 22755 CGCCGTAATATATAGTCTCGAAGATTTTCTTG--TTCAATTCGGCGGCGGCGACGCTTTC 22812 | || ||||| || || || || |||| ||| || |||| || | || ||| Sbjct 5657 CACCATAATAAATTGTTTCAAATATTTG-TTGATTTAAATTTTTCG-CTTCGTTAGATTC 5714 Query 22813 GTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGG 22872 || ||||| | ||||| | || || || |||| || ||||| || || || || || Sbjct 5715 ATATGGCATTCTCATCAAAATAAAAGCATCTGCCAATCCTTGAACTCCAATTCCAATAGG 5774 Query 22873 TCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGT 22932 || | | | | || ||| ||| || || | ||||| |||| | || | Sbjct 5775 ACGATGTCTAAAGTTTGACCGTTTAGCTTCTTCAACGGGATAGTAATTTACGTTAATAAT 5834 Query 22933 TCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAAC 22992 | | ||||| || || || || ||||| || | | |||||| || | Sbjct 5835 TTTATTCAAATTCCTTGTGACTATTTTTGTAACTTCCTTCAATTTGTGAAAGTCATATTC 5894 Query 22993 GCC-CGATT--GTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCAC 23049 | ||||| || |||||| | || | || || || || | ||| || || || || Sbjct 5895 TCTTCGATTTTGTTTGACAAACATATTTAAAGCAATTGATGCTAAATTACAAACTGCAAC 5954 Query 23050 CTCGTCTTTGGACGTG--TACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 || || || || || || | ||| ||||| ||||||| ||| ||| ||| || Sbjct 5955 TTCATCCTT--ACTTGAATATTGTACTATTTCCGTACATAAATTCGAACAACGTATTGTC 6012 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 || | ||| || || ||| || ||||| |||||||| || ||||| || || || Sbjct 6013 CCAAGATTCTGTTGATTTGATTTCCGGTTGCATGAATCCTTATACAGCATATAAGGTGTA 6072 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGC 23227 || || || || || | ||| ||||| || ||||| | || || | || | || Sbjct 6073 CCAGTTTCTACTTGAGCCTCAATGATTGCGAACCACAAATCTTGTGCCTTTACTTGACGA 6132 Query 23228 ACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAG 23287 | ||||| |||||| | || || || || | ||||||| ||||||| | Sbjct 6133 ATATACCTTCCTTCTGCTTCATAGCCTTCATAAAGTTTCACAAATTCCTCACCGTACGAT 6192 Query 23288 TCGGCCAGGCCGGG-CGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAAC 23346 || || ||||| | | | | |||||||| | ||||||| | |||||||| Sbjct 6193 TCAAAAAGACCGGGACTACTAT-TAGGACACATTAATGACCACATTTCATTGTTTTCAAC 6251 Query 23347 GCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTC 23406 || | ||| || | ||| || ||||| | || || |||| || | || | || || Sbjct 6252 CCGACGCATGAACAAATCTGGAATCCACAATGCATAAAACATGTCTCTAGCTCTGACTTC 6311 Query 23407 CTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTC 23466 ||||| || || || || || ||||||| ||| || || | || ||||||| || || Sbjct 6312 TTCTTTTCCAGTATTTTTCTTTAAATCCAGAAATTCAAAAATATCACCATGCCAAGGTTC 6371 Query 23467 GAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGT 23526 | || | ||||||||||| || | ||||| || || || || || ||||| || || Sbjct 6372 CAAATATATTGCAAACGCGCCTGGACGTTTATTTCCACCTTGGTCAACATAACGTGCGGT 6431 Query 23527 GTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCAC 23586 || ||||| ||||||| ||| || || || || || || || | || || | Sbjct 6432 ATTATTGTATACTCTTAACATTGGAACAAGGCCATTTGAAATCCCATTTGTACCAGCTAT 6491 Query 23587 ACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGA 23646 | | ||||||||||||| | ||||| | | ||| || || || | ||||| Sbjct 6492 ATATGTTCCTTTTGCTCGAATGCAATGAACATTAACACCAATTCCACCTGCTGATTTGCT 6551 Query 23647 TATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGAT 23688 ||| | ||||||||||| | || || || || ||||| || Sbjct 6552 TATTAATGCGCATTGTTTTAATGTATCATAAATACCCTCAAT 6593 >seq119 Length=197918 Score = 210 bits (232), Expect = 2e-49 Identities = 552/836 (66%), Gaps = 20/836 (2%) Strand=Plus/Minus Query 57589 AGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATT 57648 |||| ||||| || ||||| ||||| ||||| || | || || ||| || || | Sbjct 167983 AGGCTGAAGCCAGCTTCTGGACAGTCGAGGAAGTCGATTTATCAAAAGATATGGAAGACT 167924 Query 57649 GGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCG 57708 || | ||||| || || ||| | ||||||| || || || || || || || | Sbjct 167923 GGAACAATCTCAAGGATTCAGAGCGTCATTTTATCTCGCATGTATTAGCTTTCTTTGCTG 167864 Query 57709 CATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCA--CAAGAAGTGCAAGT 57766 |||| ||||| || || || |||||||| | || | ||||| || ||||| ||||| Sbjct 167863 CATCTGATGGCATCGTAAATGAGAATTTAATTGAGCG--TTTCAGTCAGGAAGTTCAAGT 167806 Query 57767 GACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAAT 57826 | || || ||| ||| || ||||| ||| | || || ||||| || || || || || Sbjct 167805 TCCAGAAGCTCGATTCTTCTATGGATTCCAAATTGCTATGGAAAATGTACACTCGGAGAT 167746 Query 57827 GTATTCGCTACTCATCGATACGTACGTGAAGGA--CAACGACGAGAAACGTAGACTG--- 57881 ||| || || | || || || || | | || ||| || | ||| |||| Sbjct 167745 GTACTCAATATTAATTGAAACTTATATTAGAGATGCAA-----AGCAGCGT-GACTTCTT 167692 Query 57882 -TTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATG 57940 ||||| || || || ||| | || | |||||||| || ||| | | || || Sbjct 167691 ATTCAATGCAATTGAGACACTTCCATGTGTTAAGAAGAAGGCTGACTGGGCTTTAAATTG 167632 Query 57941 GATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGG 58000 |||| ||| | || | || | || | | || || || || || |||||||| Sbjct 167631 GATATCCAGCAAGAATGCAAACTTTGGTGAACGAGTTATTGCTTTTGCAGCTGTCGAAGG 167572 Query 58001 TATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCC 58060 || |||||| || |||||||| || ||||||||||| ||||| | || | ||||| Sbjct 167571 GATTTTCTTTAGTGGTAGCTTTGCAGCTATATTTTGGATTAAGAAGAGAGGATTAATGCC 167512 Query 58061 CGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGC 58120 || |||| ||| || || | || ||| | ||||| || || ||| ||| ||||| Sbjct 167511 AGGGTTGACATTTTCAAATGAACTTATTTCGAGAGACGAAGGACTTCATCGTGACTTTGC 167452 Query 58121 GTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTAT 58180 ||| |||||||| || ||| | || || | ||| | | | || ||||| Sbjct 167451 ATGCTTAATGTACAAACATCTTGAACAGAAGCCACCAAAGGAAAGAGTAGTTGAAATTAT 167392 Query 58181 CACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCT 58240 ||| ||||| || || || || || ||| | || || || || || || ||| | Sbjct 167391 CACAGAGGCTGTAAAAATTGAGAAGGAATTTTTAACTGACGCACTTCCAGTTAAGATGTT 167332 Query 58241 CGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCT 58300 || ||||| |||||| ||| | ||||||| || |||||||| || | ||| Sbjct 167331 GGGCATGAATTGTGATTTAATGACTCAGTACATAGAATTTGTTGCTGATCATTTATTGGG 167272 Query 58301 CGAACT--GATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTG 58358 ||| | || | || | ||| || || || |||||||| || |||||| | | Sbjct 167271 TGAATTGGGACTTGATAAAGTC--TATAATACCAAAAATCCATTCTCATTTATGGAATTT 167214 Query 58359 ATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAA 58414 || || || ||||||||||||||||| |||||| ||| ||| | ||||||||||| Sbjct 167213 ATTTCACTTGAGGGCAAGACAAACTTCTTCGAACGAAAGGTTGGTGAATATCAAAA 167158 >seq296 Length=113092 Score = 120 bits (132), Expect = 3e-22 Identities = 157/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||||||||| |||||| ||||||| ||||| ||||| | || ||||| || || Sbjct 113084 CATGCAAATTTTCGTCAAGACTTTGACAGGAAAAACCATCACATTAGAAGTTGAGCCATC 113025 Query 31252 CGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| | |||| || || || || || ||||| ||||| | || || |||| Sbjct 113024 AGACACAATTGAAAATGTAAAGGCAAAG-ATCCAAGACAAAGAAGGAATTCCACCAGACC 112966 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 | |||||| | || ||||| || ||||| |||||||| | || ||||||| || | Sbjct 112965 AACAGCGTTTGATCTTCGCAGGAAAACAATTGGAAGATGGTCGTACATTGAGCGACTACA 112906 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 | || || |||||||| || | ||| |||| ||| Sbjct 112905 ATATCCAGAAAGAATCTACATTGCATTTGGTTCTT 112871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445621386618000