Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq119 214 4e-50 seq767 122 2e-22 >seq119 Length=197918 Score = 214 bits (236), Expect = 4e-50 Identities = 338/483 (70%), Gaps = 6/483 (1%) Strand=Plus/Minus Query 101855 AAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACG---ATTTGGCGGAA 101911 |||||||||| | |||||| | |||||||| ||||| || | | || | ||| Sbjct 167660 AAGAAGAAGGCTGACTGGGCTTTAAATTGGATATCCAGCAAGAATGCAAACTTTGGTGAA 167601 Query 101912 CTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATT 101971 | | || |||| ||||| || || ||||| || |||||||||||| || ||| | || Sbjct 167600 CGAGTTATTGCTTTTGCAGCTGTCGAAGGGATTTTCTTTAGTGGTAGCTTTGCAGCTATA 167541 Query 101972 TTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCT 102031 || ||||| ||||| || || | |||| || | || | || ||||| | ||||| Sbjct 167540 TTTTGGATTAAGAAGAGAGGATTAATGCCAGGGTTGACATTTTCAAATGAACTTATTTCG 167481 Query 102032 AGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGAT 102091 || |||||||| |||||||| |||||||||||| | ||| ||| | | ||| | Sbjct 167480 AGAGACGAAGGACTTCATCGTGACTTTGCATGCTTAATGTACAAACA---TCTTGAACAG 167424 Query 102092 ACCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAA 102151 | ||| ||| ||||| | |||||||| |||| || || || |||||| | ||| Sbjct 167423 AAGCCACCAAAGGAAAGAGTAGTTGAAATTATCACAGAGGCTGTAAAAATTGAGAAGGAA 167364 Query 102152 TTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAG 102211 ||| | || | | || || ||||| | |||| ||||| || | || |||| ||| Sbjct 167363 TTTTTAACTGACGCACTTCCAGTTAAGATGTTGGGCATGAATTGTGATTTAATGACTCAG 167304 Query 102212 TACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAAT 102271 ||||| |||||||| || ||| | |||||| |||| ||||||| || || ||||||| Sbjct 167303 TACATAGAATTTGTTGCTGATCATTTATTGGGTGAATTGGGACTTGATAAAGTCTATAAT 167244 Query 102272 GTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTT 102331 | || || ||| |||| ||||| |||||| || ||| ||||| ||||| || Sbjct 167243 ACCAAAAATCCATTCTCATTTATGGAATTTATTTCACTTGAGGGCAAGACAAACTTCTTC 167184 Query 102332 GAA 102334 ||| Sbjct 167183 GAA 167181 >seq767 Length=55330 Score = 122 bits (134), Expect = 2e-22 Identities = 323/485 (67%), Gaps = 14/485 (3%) Strand=Plus/Plus Query 35223 TTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGT 35282 ||||| | || || ||||| | | || ||| ||||||||| ||||| || |||| Sbjct 37402 TTCCATTGCTTACAACCAAACGAGTATTTTGGCGAGGAGTTGCTGAAGAGCTTCTATGGT 37461 Query 35283 TCATCAGGGGCAATACAGACGCCAAAGAATT---GGCCAAGAAGAAGATACACATCTGGA 35339 || | | || ||||| || ||| | ||| |||||| ||| | || ||| Sbjct 37462 TCGTAAAAGGATCCACAGATGCTAAATTGCTACAGGC---GAAGAATATAAAAATTTGGG 37518 Query 35340 ACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTAT-ACGATAGAGCAGAGGGA 35398 ||| || | |||| ||||| | || | | |||| | | ||| | || || Sbjct 37519 ACGGAAACAGTACGCGTGAATTCCTTGAT-GCATCCGGTTTTCATGATCGTCAAGTTGGT 37577 Query 35399 GATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACCTGT 35458 |||||||| || || || ||||| || ||||| ||||||||||| ||||| | || || Sbjct 37578 GATTTGGGTCCAGTTTATGGATTTCAGTGGCGACATTTTGGTGCCAAATATAAAACATGC 37637 Query 35459 TCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGAGA 35518 | || ||| || | || ||||| ||||| || | | | | | | | Sbjct 37638 GATGATGAATATGAAGGCCAAGGAATTGACCAATTAAAGGATGTCATTGAACGCATCAAA 37697 Query 35519 GAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTT 35578 | |||||| ||||| | | || || ||| ||||||||||| |||| ||| | Sbjct 37698 GCCAATCCAAATGATCGTCGTATTATATTGAGCGCATGGAATCCAGTGGACATTCCACAA 37757 Query 35579 ATGGCTCTTCCTCCATGCCACATGACT-GCTCAATTTTATGTGGCTAATGGAGAATTGTC 35637 ||||| ||||| ||||| ||| || || | |||||||||||| |||||||| |||||| Sbjct 37758 ATGGCACTTCCACCATGTCAC-TGTCTCGTTCAATTTTATGTCGCTAATGGTGAATTGAG 37816 Query 35638 GTGCCAGTTGTATCAGCGA--AGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCA 35695 ||||| || || || || ||| || ||| || | || || || |||||||||||| Sbjct 37817 CTGCCAATTATACCAAAGATCAGCTGATATG--GGTCTTGGAGTTCCTTTCAATATTGCA 37874 Query 35696 TCATA 35700 || || Sbjct 37875 TCGTA 37879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989254027853875