Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq343 475 4e-129 seq119 260 2e-64 >seq343 Length=103200 Score = 475 bits (526), Expect = 4e-129 Identities = 1107/1658 (67%), Gaps = 39/1658 (2%) Strand=Plus/Plus Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62126 |||||||| || |||| || |||||||| ||||| || || | |||||||||||||| Sbjct 5041 GCGGGTTTTGTTCGTAAGTAATACATTCCAGTTTTCAGTCCCATTTTCCATCCGTAAAAA 5100 Query 62127 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62186 || || ||||| ||| |||| | || || |||| ||| ||||| | || |||||| Sbjct 5101 TGAATGGACGTTAATTTCCCATAATTGGGTTCAGCTACATGAATATTAAACGACTGACTT 5160 Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCC 62246 || || || || ||||| | || |||| ||||| || ||||| | ||||||| Sbjct 5161 TGGTCTATAAAAGCTCCACGATCGGCAGACATTTGAATTTGTGTCTTGACGGAAATTTCC 5220 Query 62247 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG-----TATTCTGAATGG 62301 |||| |||||||| | || ||||| ||||||| |||| || |||| || | Sbjct 5221 CAAACCGTTTTATATATATTTTTTATATCATCTGGAA--TTTGCTCAATAGTCTGTATTG 5278 Query 62302 ATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 62361 | ||| || | | ||||| | ||||| || || |||| |||||| | || || | Sbjct 5279 AACCATTATTTGCAATAATTTTGTTCTTCATATCGTCATCCCATAAACCACGTTCAGTCA 5338 Query 62362 AAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGT 62421 || | | | ||||| | ||||| ||||| ||||| ||| | || | ||| | | Sbjct 5339 AATCCTTGATAAGATGGTGATTAACAACTTGAAATTCACCACTGAGAACACGACGATTAT 5398 Query 62422 AAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 62481 ||| |||||| || || ||||| | ||||||||| |||||||| ||||||||||||| Sbjct 5399 AAACATTACTTGTGTAAGGTTCAAAGCTCTCATTATTACCCAAAATCTGAGCAGTTGATG 5458 Query 62482 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTT 62541 | |||||||| ||||| | || | ||||| ||||| | || | ||||| |||| Sbjct 5459 CTGTCGGCATTGGTGCAATTAAGAGTGAATTTCGGAGACCAAACTTTTTAATTTTTTCTT 5518 Query 62542 TTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAA 62601 ||||| |||||||| ||| | ||| | || | |||||||| | Sbjct 5519 TTAGAGCTTCCCAATCCCACAAATCGGTGGGAGTCTTATCCCACATATCATATTGTAATA 5578 Query 62602 TACCGTT--ACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAG 62659 ||| || || || || |||| | || || ||||||||||| | || |||| Sbjct 5579 CACCTTTTGAC-ACCGGAC-ATCCATCGTAAGTCTCATATGGTCCCAATTGTTCTGCTAA 5636 Query 62660 TTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATC 62719 || ||| || | ||| |||||||| |||||||| |||||||| || | | ||||| || Sbjct 5637 TTCACAGCTGGACTCCAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAAATT 5696 Query 62720 TTGTGCTTCCGGGCTA---TCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCC 62776 || ||||| | || ||| |||| | | | |||||| || || || ||||| Sbjct 5697 TTTCGCTTC---GTTAGATTCATATGGCATTCTCATCAAAATAAAAGCATCTGCCAATCC 5753 Query 62777 TTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGG 62836 |||||| ||||| || ||||| | |||||| || || || ||||||| || || Sbjct 5754 TTGAACTCCAATTCCAATAGGACGATGTCTAAAGTTTGACCGTTTAGCTTCTTCAACGGG 5813 Query 62837 ATAATAATTAATATCTATAATTTTATTGAGAT---TTCTGACAATTACTTTGACCACATC 62893 ||| ||||| | | ||||||||||| | || || |||| ||| |||| || || Sbjct 5814 ATAGTAATTTACGTTAATAATTTTATTCAAATTCCTTGTGACTATT--TTTG-TAACTTC 5870 Query 62894 CTTCAGTTTGAGAAAATCAAATCGCCCATCTATT-------ACAAACATGTTCAATGCAA 62946 ||||| |||| |||| ||| || | | || ||| |||||||| || || |||| Sbjct 5871 CTTCAATTTGTGAAAGTCATAT-TCTCTTCGATTTTGTTTGACAAACATATTTAAAGCAA 5929 Query 62947 CAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGC 63006 ||||| | |||||| || || || |||| | | |||||||| ||| || || | Sbjct 5930 TTGATGCTAAATTACAAACTGCAACTTCATCCTTACTTGAATATTGTACTATTTCCGTAC 5989 Query 63007 AAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 63066 | | ||| ||| || || || | ||| |||||||| || ||| || | || Sbjct 5990 ATAAATTCGAACAACGTATTGTCCCAAGATTCTGTTGATTTGATTTCCGGTTGCATGAAT 6049 Query 63067 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 63126 ||||||| || || | || ||||||||||| | |||| || || || || ||| | Sbjct 6050 CCTTATACAGCATATAAGGTGTACCAGTTTCTACTTGAGCCTCAATGATTGCGAACCACA 6109 Query 63127 CGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGT--ATACAA 63184 || | ||||||| | | | || || | |||| ||| |||| | ||| | Sbjct 6110 AATCTTGTGCCTTTACTTGACGAATATACCTTCCTTCTGCTTC--ATAGCCTTCATAAAG 6167 Query 63185 TCGTTCGAACTCGTCTCCCCAAAC-ATTGTCCAA-TCTAGGACATTCATCCGGACACATC 63242 | | || || ||| || || ||| || | |||| || |||||||| Sbjct 6168 TTTCACAAATTC--CTCACCGTACGATTCAAAAAGACCGGGACTACTATTAGGACACATT 6225 Query 63243 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63302 || |||||| | | | | | || || ||| || | ||| |||||||| | || Sbjct 6226 AATGACCACATTTCATTGTTTTCAACCCGACGCATGAACAAATCTGGAATCCACAATGCA 6285 Query 63303 ATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 63362 ||| | ||||| | ||| ||| || ||||| ||||| || || | ||| || || Sbjct 6286 TAAAACATGTCTCTAGCTCTGACTTCTTCTTTTCCAGTATTTTTCTTTAAATCCAGAAAT 6345 Query 63363 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 63422 | | ||||||| |||||| |||||||| ||||| || | | || || ||||| ||| Sbjct 6346 TCAAAAATATCACCATGCCAAGGTTCCAAATATATTGCAAACGCGCCTGGACGTTTATTT 6405 Query 63423 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63482 || || || || | || | ||||| ||||| || ||||| |||||||||| || || Sbjct 6406 CCACCTTGGTCAACATAACGTGCGGTATTATTGTATACTCTTAACATTGGAACAAGGCCA 6465 Query 63483 TTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGAT 63542 ||||| || ||||| ||||| | ||||| ||| | || ||||| | || Sbjct 6466 TTTGAAATCCCATTTGTACCAGCTATATATGTTCCTTTTGCTCGAATGCAATGAACATTA 6525 Query 63543 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATG 63602 | ||| ||||| ||||| ||| |||||||||||| ||||||| || ||||| || Sbjct 6526 ACACCAATTCCACCTGCTGATTTGCTTATTAATGCGCATTGTTTTAATGTATCATAAATA 6585 Query 63603 CCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTA 63662 || || || |||||| ||| |||| || || || | ||| | || | Sbjct 6586 CCCTCAATAGAATCATCTGACATTGATAGTAAGAAGCATGAGGATAATTGAGGGCGTGGC 6645 Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63700 ||| | || ||||| || ||||| || |||||||| Sbjct 6646 GTTGCAGCTGCGAATAAAGTTGGAGATGCATGCGTAAA 6683 >seq119 Length=197918 Score = 260 bits (288), Expect = 2e-64 Identities = 565/834 (68%), Gaps = 15/834 (2%) Strand=Plus/Plus Query 33275 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 33334 |||||||||||| | ||||| |||||||| || | |||||| || || || || || Sbjct 167142 AGACATAACTCCACTCTTTTGATATTCACCAACCTTTCGTTCGAAGAAGTTTGTCTTGCC 167201 Query 33335 TTCCAATGATATATTTTCCATGAAATCA-AACGGATTGGTAACATTGTAAAtttttttAA 33393 || | ||| ||| |||||| |||| | || ||||| | ||| || | ||| | || Sbjct 167202 CTCAAGTGAAATAAATTCCAT-AAATGAGAATGGATTTTTGGTATTATAGACTTTATCAA 167260 Query 33394 ATCCCAATTCA-GAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCA 33452 |||||||||| ||| ||| ||| || || |||||||| || |||| | ||| Sbjct 167261 GTCCCAATTCACCCAATAAAT-GATCAGCAACAAATTCTATGTACTGAGTCATTAAATCA 167319 Query 33453 CAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGAT 33512 |||||||| || | | ||||||||||| || |||| | |||||| | ||||| | Sbjct 167320 CAATTCATGCCCAACATCTTAACTGGAAGTGCGTCAGTTAAAAATTCCTTCTCAATTTTT 167379 Query 33513 ACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGG---ATGTAATAAATGT 33569 || || | ||| ||||| | ||| | ||| | ||||| ||| | |||| Sbjct 167380 ACAGCCTCTGTGATAAT---TTCAACTACTCTTTCCTTTGGTGGCTTCTGTTCAAGATGT 167436 Query 33570 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTA 33629 || |||| || ||||| || || | || || || |||||||| ||| | ||| || Sbjct 167437 TTGTACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTT 167496 Query 33630 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33689 ||||| || | || ||||||| || | ||| |||| ||||||||| | || || Sbjct 167497 GAAAATGTCAACCCTGGCATTAATCCTCTCTTCTTAATCCAAAATATAGCTGCAAAGCTA 167556 Query 33690 CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33749 || |||||| || ||||| || || ||||| ||||||| || || ||| | || Sbjct 167557 CCACTAAAGAAAATCCCTTCGACAGCTGCAAAAGCAATAACTCGTTCACCAAAGTTTGCA 167616 Query 33750 CT-GTCATG--TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 33806 | | || |||||| ||| |||||| || |||||||| || ||||| || | || Sbjct 167617 TTCTTGCTGGATATCCAATTTAAAGCCCAGTCAGCCTTCTTCTTAACACATGGAAGTGTC 167676 Query 33807 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA 33866 || || ||||| || | ||| | || |||| ||| |||||| || || || Sbjct 167677 TCAATTGCATTGAATAAGAAGTCACGCTGCTTTGCATCTCTAATATAAGTTTCAATTAAT 167736 Query 33867 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA 33926 | ||||| ||||| || | ||||| || || || || ||||| ||||| ||| | Sbjct 167737 ATTGAGTACATCTCCGAGTGTACATTTTCCATAGCAATTTGGAATCCATAGAAGAATCGA 167796 Query 33927 GCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCA 33986 || || | || || ||||| || || || || |||||| ||||| || || ||| Sbjct 167797 GCTTCTGGAACTTGAACTTCCTGACTGAAACGCTCAATTAAATTCTCATTTACGATGCCA 167856 Query 33987 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT-ATTTTTCGTCTGGTGTTAG 34045 ||| || ||||| || || |||||||| ||||||| | | | | | | || Sbjct 167857 TCAGATGCAGCAAAGAAAGCTAATACATGCGAGATAAAATGACGCTCTGAATCCT-TGAG 167915 Query 34046 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 34099 || ||||| || | |||||||| |||| ||| ||||| || |||||||| || Sbjct 167916 ATTGTTCCAGTCTTCCATATCTTTTGATAAATCGACTTCCTCGACTGTCCAGAA 167969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629612712462000