Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq343 484 6e-132 seq119 351 9e-92 >seq343 Length=103200 Score = 484 bits (536), Expect = 6e-132 Identities = 1140/1689 (67%), Gaps = 59/1689 (3%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||| || || | |||| ||||| || | |||||||| | ||||||||||||||| Sbjct 5014 TCAACAGTAAACTGAATAGCATTTGCAGCGGGTTTTGTTCGTAAGTAATACATTCCAGTT 5073 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || || |||| | |||||||||||||||| || || | ||| | || | || | | Sbjct 5074 TTCAGTCCCATTTTCCATCCGTAAAAATGAATGGACGTTAATTTCCCATAATTGGGTTCA 5133 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 ||| || || | | || |||||||| |||||||| || || | ||||| | |||| Sbjct 5134 GCTACATGAATATTAAACGACTGACTTTGGTCTATAAAAGCTCCACGATCGGCAGACATT 5193 Query 36970 TCTAAAATACATTTTTGA--GATATCTCCCAAACCGTTTTATATATTTGTTTTATATTAT 37027 | || | | |||| || || |||||||||||||||||||| | |||||||| || Sbjct 5194 TG--AATTTGTGTCTTGACGGAAATTTCCCAAACCGTTTTATATATATTTTTTATATCAT 5251 Query 37028 CTGGTAAAT-CTAAAT-GT-TGAATAGAACCATTATGTAACACAATTGTATTCTTTATGT 37084 |||| | | || ||| || || || |||||||||| | | |||| | ||||| || | Sbjct 5252 CTGGAATTTGCTCAATAGTCTGTATTGAACCATTATTTGCAATAATTTTGTTCTTCATAT 5311 Query 37085 CATTATTCCACATATTTCTACTTATTAGT----TCTCTCAATAGGTGTGGATTTACAACC 37140 | | || ||| | | | || | | ||| || | | || || |||| ||||| Sbjct 5312 CGTCATCCCATAAA---CCACGT-TCAGTCAAATCCTTGATAAGATGGTGATTAACAACT 5367 Query 37141 TGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGAC 37200 ||||| || ||| | || | | |||| | ||| || || || ||||||| | | Sbjct 5368 TGAAATTCACCACTGAGAACACGACGATTATAAACATTACTTGTGTAAGGTTCAAAGCTC 5427 Query 37201 TCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTA 37260 |||||||||| || || |||| || ||||| || ||||||||||| |||| || | Sbjct 5428 TCATTATTACCCAAAATCTGAGCAGTTGATGCTGTCGGCATTGGTGCAATTAAGAGTGAA 5487 Query 37261 TTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTT 37320 |||| | ||| | |||||| | | |||||| | | ||||||||| ||||| || Sbjct 5488 TTTCGGAGACCAAACTTTTTAATTTTTTCTTTTAGAGCTTCCCAATCCCACAAATCGGTG 5547 Query 37321 GGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATAT 37380 || |||| ||||||||||||||||| | |||||| | | ||| | | | || Sbjct 5548 GGAGTCTTATCCCACATATCATATTGTAATACACCTTTTGACACCGGACATCCATCGTAA 5607 Query 37381 GTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATAT 37440 |||||||| ||||| | || |||| ||| || || || || | ||| ||||||| Sbjct 5608 GTCTCATATGGTCCCAATTGTTCTGCTAATTCACAGCTGGACTCCAATGCACCATAATAA 5667 Query 37441 ATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTC-TTCGCTATCGAAT-GCATAGC 37498 |||||||| || |||||| |||||| |||| ||||| || | | || || |||| | Sbjct 5668 ATTGTTTCAAATATTTGTTGATTTAAATTTTTCGCTTCGTTAGAT-TCATATGGCAT-TC 5725 Query 37499 CCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCT 37558 || || ||||| |||| ||||| || ||||| || || || || || | |||| | Sbjct 5726 TCATCAAAATAAAAGCATCTGCCAATCCTTGAACTCCAATTCCAATAGGACGATGTCTAA 5785 Query 37559 TATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGAT 37618 || || | | |||| || ||||| ||||| | | || |||||||| | || Sbjct 5786 AGTTTGACCGTTTAGCTTCTTCAACGGGATAGTAATTTACGTTAATAATTTTATTCAAAT 5845 Query 37619 TTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAA--CATA---AATACG-TTAT 37672 | | | |||||| |||| | |||| |||| || |||| | || || | Sbjct 5846 TCCTTGTGACTATTTTTGTAACTTCCTTCAATTTGTGAAAGTCATATTCTCTTCGATTTT 5905 Query 37673 TATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGT 37732 || ||||| || | || | ||| ||| ||| |||||| || ||||||||| || | Sbjct 5906 GTTTGACAAACATATTTAAAGCAATTGATGCTAAATTACAAACTGCAACTTCA---TCCT 5962 Query 37733 TACT---AAATTGTATAATCTCTGTACAGAGATTACTCGATCTA---ATTGTTCCCAAAT 37786 |||| | |||||| || || ||||| | || |||| | | ||||| || | || Sbjct 5963 TACTTGAATATTGTACTATTTCCGTACATAAAT---TCGAACAACGTATTGTCCCAAGAT 6019 Query 37787 TGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTT 37846 | |||||| ||||| || || ||||| ||||| || ||||| || || || || Sbjct 6020 TCTGTTGATTTGATTTCCGGTTGCATGAATCCTTATACAGCATATAAGGTGTACCAGTTT 6079 Query 37847 CTATTTGAGCCTCGATAATAGATTTCCATAAA-CTTCTTGCTTTA----ACGATCGCTTT 37901 ||| ||||||||| || || | ||| ||| ||| | ||||| |||| | | Sbjct 6080 CTACTTGAGCCTCAATGATTGCGAACCACAAATCTTGTGCCTTTACTTGACGA---ATAT 6136 Query 37902 AAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATAC--A 37959 | || ||| || ||| || || ||| | ||| ||| || | | || ||| Sbjct 6137 ACCTTCCTTC--TGCTTCATAGCCTTCATAAAGTTTCACAAATTCCT--CACCGTACGAT 6192 Query 37960 TCGCATAATCCTGGAC-ATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTAC 38018 || | | || |||| | | | |||||||||| ||||| ||||| ||||| || Sbjct 6193 TCAAAAAGACCGGGACTACTATTA-GGACACATTAATGACCACATTTCATTGTTTTCAAC 6251 Query 38019 GCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTC 38078 || ||| || ||||| || | ||| |||||| ||| | ||| | | ||| ||| Sbjct 6252 CCGACGCATGAACAAATCTGGAATCCACAATGCATAAAACATGTCTCTAGCTCTGACTTC 6311 Query 38079 TTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTC 38138 ||| || || ||| || |||| ||||| || || |||||| | ||||| ||||| Sbjct 6312 TTCTTTTCCAGTATTTTTCTTTAAATCCAGAAATTCAAAAATATCACCATGCCAAGGTTC 6371 Query 38139 TATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGT 38198 | ||| || | | || ||||| | ||||| || || || | || ||| | | || Sbjct 6372 CAAATATATTGCAAACGCGCCTGGACGTTTATTTCCACCTTGGTCAACATAACGTGCGGT 6431 Query 38199 GTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATAT 38258 ||||| |||| ||||||||| || || | ||||| || | || ||| |||| | ||| Sbjct 6432 ATTATTGTATACTCTTAACATTGGAACAAGGCCATTTGAAATCCCATTTGTACCAGCTAT 6491 Query 38259 ATAAGTACCCTTAGCTCGTAT--ATTACTTATCGACAATCCTATTCCACCTGCATGTTTT 38316 ||| || || || ||||| || | | || ||| || ||||||||||| || ||| Sbjct 6492 ATATGTTCCTTTTGCTCGAATGCAATGAACATTAACA--CCAATTCCACCTGC-TGATTT 6548 Query 38317 G-ATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTAT 38375 | |||||| |||||||||||||| |||||| | ||||| || ||| ||||| || Sbjct 6549 GCTTATTAATGCGCATTGTTTTAATGTATCATAAATACCCTCAATAGAATCATCTGACAT 6608 Query 38376 TGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGG 38435 || ||||| || || || | |||||| ||| ||| | || ||||| || || Sbjct 6609 TGATAGTAAGAAGCATGAGGATAATTGAGGGCGTGGCGTTGCAGCTGCGAATAAAGTTGG 6668 Query 38436 AGATGCATG 38444 ||||||||| Sbjct 6669 AGATGCATG 6677 >seq119 Length=197918 Score = 351 bits (388), Expect = 9e-92 Identities = 575/824 (70%), Gaps = 11/824 (1%) Strand=Plus/Plus Query 11337 TCTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATAT 11396 ||||||||||||||| ||| ||||||||| || || ||||| || || ||||| ||| Sbjct 167156 TCTTTTGATATTCACCAACCTTTCGTTCGAAGAAGTTTGTCTTGCCCTCAAGTGAAATAA 167215 Query 11397 ACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTA 11456 | |||||||| || ||||| | ||| ||||||| ||| || || || | Sbjct 167216 ATTCCATAAATGAGAATGGATTTTTGGTATTATAGACTTTATCAAGTCCCAATTCACCCA 167275 Query 11457 ATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAA 11516 |||| ||| || || |||||||| ||||||| ||||||| ||||||||| || | | Sbjct 167276 ATAAATGATCAGCAACAAATTCTATGTACTGAGTCATTAAATCACAATTCATGCCCAACA 167335 Query 11517 GATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTA 11576 | || |||| || | || ||||| ||||| || || || || || || |||| | Sbjct 167336 TCTTAACTGGAAGTGCGTCAGTTAAAAATTCCTTCTCAATTTTTACAGCCTCTGTGATAA 167395 Query 11577 T--CGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGC 11634 | | || || |||||| | ||| ||| | |||||| ||||||| || || Sbjct 167396 TTTCAAC--TACTCTTTCCTTTGGTGGCTTCTGTTCAAGATGTTTGTACATTAAGCATGC 167453 Query 11635 AAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGG 11694 ||| |||| ||| | ||||||||||| || |||||||| |||||||| || || || Sbjct 167454 AAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAAAATGTCAACCCTGG 167513 Query 11695 CATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCC 11754 ||| ||||||| || || |||||||||||||| ||||| |||| |||||| || || Sbjct 167514 CATTAATCCTCTCTTCTTAATCCAAAATATAGCTGCAAAGCTACCACTAAAGAAAATCCC 167573 Query 11755 CTCCACAGCTGCAAATGCTACTACTCTTTCTCCA---TATACCTTGTTGCTAGATATCCA 11811 || ||||||||||| || | |||| ||| ||| | | | || ||||| |||||||| Sbjct 167574 TTCGACAGCTGCAAAAGCAATAACTCGTTCACCAAAGTTTGCATTCTTGCTGGATATCCA 167633 Query 11812 TTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAA 11871 ||| ||||| ||||| ||||| || || ||| | ||| || || || || ||||| Sbjct 167634 ATTTAAAGCCCAGTCAGCCTTCTTCTTAACACATGGAAGTGTCTCAATTGCATTGAATAA 167693 Query 11872 ATGCATTTTTTCTATATT--ATCTCTTACATATGTATCTATTAATAAACTATACATTTCT 11929 | | | || || |||||| | ||| || || ||||||| ||||| || Sbjct 167694 --GAAGTCACGCTGCTTTGCATCTCTAATATAAGTTTCAATTAATATTGAGTACATCTCC 167751 Query 11930 GAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGT 11989 || || | |||||||||||| ||||| ||||||||||| |||| || |||| | || Sbjct 167752 GAGTGTACATTTTCCATAGCAATTTGGAATCCATAGAAGAATCGAGCTTCTGGAACTTGA 167811 Query 11990 ACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAA 12049 || ||| | || | || ||||||||||||||| || |||||| | ||||| Sbjct 167812 ACTTCCTGACTGAAACGCTCAATTAAATTCTCATTTACGATGCCATCAGATGCAGCAAAG 167871 Query 12050 AATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCT 12109 || |||| || ||| ||||| | || | | | || | ||| || || Sbjct 167872 AAAGCTAATACATGCGAGATAAAATGACGCTCTGAATCCTTGAGATTGTTCCAGTCTTCC 167931 Query 12110 AAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGC 12153 | ||||||||||||||| ||||| || || ||||| || || || Sbjct 167932 ATATCTTTTGATAAATCGACTTCCTCGACTGTCCAGAAGCTGGC 167975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468372383026000