Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07]
26,025 sequences; 213,462,749 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq343 500 1e-136
seq119 311 1e-79
>seq343
Length=103200
Score = 500 bits (554), Expect = 1e-136
Identities = 1061/1575 (67%), Gaps = 35/1575 (2%)
Strand=Plus/Plus
Query 64860 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 64919
|||||||| || |||| || |||||||| ||||| || || | ||||||||||||||
Sbjct 5041 GCGGGTTTTGTTCGTAAGTAATACATTCCAGTTTTCAGTCCCATTTTCCATCCGTAAAAA 5100
Query 64920 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 64979
|| || ||||| ||| |||| | || || |||| ||| ||||| | || ||||||
Sbjct 5101 TGAATGGACGTTAATTTCCCATAATTGGGTTCAGCTACATGAATATTAAACGACTGACTT 5160
Query 64980 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 65039
|| || || || ||||| | || |||| ||||| || ||||| | |||||||
Sbjct 5161 TGGTCTATAAAAGCTCCACGATCGGCAGACATTTGAATTTGTGTCTTGACGGAAATTTCC 5220
Query 65040 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG-----TATTCTGAATGG 65094
|||| |||||||| | || ||||| ||||||| |||| || |||| || |
Sbjct 5221 CAAACCGTTTTATATATATTTTTTATATCATCTGGAA--TTTGCTCAATAGTCTGTATTG 5278
Query 65095 ATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 65154
| ||| || ||| ||||| | ||||| || || |||| |||||| | || || |
Sbjct 5279 AACCATTATTTGCAATAATTTTGTTCTTCATATCGTCATCCCATAAACCACGTTCAGTCA 5338
Query 65155 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 65214
|| | | | ||||| ||||||| ||||||||||| ||| | || | ||| | |
Sbjct 5339 AATCCTTGATAAGATGGTGATTAACAACTTGAAATTCACCACTGAGAACACGACGATTAT 5398
Query 65215 AAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 65274
||| |||||| || || ||||| | ||||||||| |||||||| |||||||||||||
Sbjct 5399 AAACATTACTTGTGTAAGGTTCAAAGCTCTCATTATTACCCAAAATCTGAGCAGTTGATG 5458
Query 65275 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTT 65334
| |||||||| ||||| | || | ||||| ||||| | || | ||||| ||||
Sbjct 5459 CTGTCGGCATTGGTGCAATTAAGAGTGAATTTCGGAGACCAAACTTTTTAATTTTTTCTT 5518
Query 65335 TTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAA 65394
|||||| |||||||| ||| | ||| | || ||||| |
Sbjct 5519 TTAGAGCTTCCCAATCCCACAAATCGGTGGGAGTCTTATCCCACATATCATATTGTAATA 5578
Query 65395 TACCGTT--ACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 65452
||| || || || || |||| | || || || |||||||| | || ||||
Sbjct 5579 CACCTTTTGAC-ACCGGAC-ATCCATCGTAAGTCTCATATGGTCCCAATTGTTCTGCTAA 5636
Query 65453 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC 65512
|||||| || | ||| |||||||| |||||||| ||||| || || | | ||||| ||
Sbjct 5637 TTCACAGCTGGACTCCAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAAATT 5696
Query 65513 TTGTGCTTCCAGGCTA---TCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCC 65569
|| ||||| | || ||| |||| | | | |||||| || ||||| |||||
Sbjct 5697 TTTCGCTTC---GTTAGATTCATATGGCATTCTCATCAAAATAAAAGCATCTGCCAATCC 5753
Query 65570 TTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGG 65629
|||||| ||||| || ||||| | |||||| || || || ||||||| || ||
Sbjct 5754 TTGAACTCCAATTCCAATAGGACGATGTCTAAAGTTTGACCGTTTAGCTTCTTCAACGGG 5813
Query 65630 ATAATAATTAATATCTATAATTTTATTGAGAT---TTCTGACAATTACTTTGACCACATC 65686
||| ||||| | | ||||||||||| | || || |||| ||| |||| || ||
Sbjct 5814 ATAGTAATTTACGTTAATAATTTTATTCAAATTCCTTGTGACTATT--TTTG-TAACTTC 5870
Query 65687 CTTCAGTTTGAGAAAATCAAATCGCTCATCTATT-------ACAAACATGTTCAATGCAA 65739
||||| |||| |||| ||| || ||| || ||| |||||||| || || ||||
Sbjct 5871 CTTCAATTTGTGAAAGTCATAT-TCTCTTCGATTTTGTTTGACAAACATATTTAAAGCAA 5929
Query 65740 CAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGC 65799
||||| | ||||||||| || || |||| | | |||||||| ||| || || |
Sbjct 5930 TTGATGCTAAATTACAAACTGCAACTTCATCCTTACTTGAATATTGTACTATTTCCGTAC 5989
Query 65800 AAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 65859
| | ||| ||| || || || | ||| |||||||| || ||| || | ||
Sbjct 5990 ATAAATTCGAACAACGTATTGTCCCAAGATTCTGTTGATTTGATTTCCGGTTGCATGAAT 6049
Query 65860 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 65919
||||||| || || | || ||||||||||| | |||| || || || || ||| |
Sbjct 6050 CCTTATACAGCATATAAGGTGTACCAGTTTCTACTTGAGCCTCAATGATTGCGAACCACA 6109
Query 65920 CGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATC 65979
|| | ||||||| | | | || || |||| ||| || | ||| | |
Sbjct 6110 AATCTTGTGCCTTTACTTGACGAATATACCTTCCTTCTGCTTCATAGCCTTCATAAAGTT 6169
Query 65980 GTTCGAACTCGTCTCCCCAAAC-ATTGTCCAA-TCCAGGACATTCATCCGGACACATCAA 66037
| || || ||| || || ||| || || |||| || |||||||| ||
Sbjct 6170 TCACAAATTC--CTCACCGTACGATTCAAAAAGACCGGGACTACTATTAGGACACATTAA 6227
Query 66038 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 66097
|||||| | | | | | || || ||| || | ||| |||||||| | ||
Sbjct 6228 TGACCACATTTCATTGTTTTCAACCCGACGCATGAACAAATCTGGAATCCACAATGCATA 6287
Query 66098 AAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 66157
||| | ||||| | ||| ||| || ||||| ||||| || || | ||| || || |
Sbjct 6288 AAACATGTCTCTAGCTCTGACTTCTTCTTTTCCAGTATTTTTCTTTAAATCCAGAAATTC 6347
Query 66158 CATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 66217
| ||||||| |||||| |||||||| ||||| || | | || || ||||| |||||
Sbjct 6348 AAAAATATCACCATGCCAAGGTTCCAAATATATTGCAAACGCGCCTGGACGTTTATTTCC 6407
Query 66218 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 66277
|| || || | || | ||||| ||||| || ||||| |||||||||| || |||||
Sbjct 6408 ACCTTGGTCAACATAACGTGCGGTATTATTGTATACTCTTAACATTGGAACAAGGCCATT 6467
Query 66278 GGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAG 66337
|| | ||||| || || | ||||| |||| |||| ||||| | || |
Sbjct 6468 TGAAATCCCATTTGTACCAGCTATATATGTTCCTTTTGCTCGAATGCAATGAACATTAAC 6527
Query 66338 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 66397
||| ||||| ||||| ||| |||||||||||| ||||||| |||||||| || ||
Sbjct 6528 ACCAATTCCACCTGCTGATTTGCTTATTAATGCGCATTGTTTTAATGTATCATAAATACC 6587
Query 66398 CTCTATACTATCATC 66412
||| ||| ||||||
Sbjct 6588 CTCAATAGAATCATC 6602
>seq119
Length=197918
Score = 311 bits (344), Expect = 1e-79
Identities = 574/833 (69%), Gaps = 13/833 (2%)
Strand=Plus/Plus
Query 35851 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACC 35910
|||||||||||| | ||||| |||||||| || | |||||| || || || || ||
Sbjct 167142 AGACATAACTCCACTCTTTTGATATTCACCAACCTTTCGTTCGAAGAAGTTTGTCTTGCC 167201
Query 35911 TTCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAA 35970
|| | ||| ||| |||||| || ||||||||| | |||||| | ||| | ||
Sbjct 167202 CTCAAGTGAAATAAATTCCATAAATGAGAATGGATTTTTGGTATTATAGACTTTATCAAG 167261
Query 35971 TCCCAATTCA-GAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCAC 36029
|||||||||| ||| ||| ||| || ||||||||||| || |||| | ||||
Sbjct 167262 TCCCAATTCACCCAATAAAT-GATCAGCAACAAATTCTATGTACTGAGTCATTAAATCAC 167320
Query 36030 AATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGA 36089
||||||| || | | ||||||||||| || |||| | |||||| | ||||| |
Sbjct 167321 AATTCATGCCCAACATCTTAACTGGAAGTGCGTCAGTTAAAAATTCCTTCTCAATTTTTA 167380
Query 36090 CCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAAT---AAATGTT 36146
| || ||||| ||||| | |||| |||| | | ||||| | | | | |||||
Sbjct 167381 CAGCCTCTGTGATAATTTCAACTACTCTTTCCT---TTGGTGGCTTCTGTTCAAGATGTT 167437
Query 36147 TAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGG 36206
| |||| || ||||| || || | || || || |||||||| ||| | ||| || |
Sbjct 167438 TGTACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTG 167497
Query 36207 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATC 36266
|||| || | || ||||||| || | ||| |||| ||||||||| | ||||| |
Sbjct 167498 AAAATGTCAACCCTGGCATTAATCCTCTCTTCTTAATCCAAAATATAGCTGCAAAGCTAC 167557
Query 36267 CAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC 36326
|| ||||||||| ||||| || || ||||| ||||||| || || ||| | |||
Sbjct 167558 CACTAAAGAAAATCCCTTCGACAGCTGCAAAAGCAATAACTCGTTCACCAAAGTTTGCAT 167617
Query 36327 T-GTCATG--TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 36383
| | || |||||| ||| |||||| || |||||||| || ||||| || | |||||
Sbjct 167618 TCTTGCTGGATATCCAATTTAAAGCCCAGTCAGCCTTCTTCTTAACACATGGAAGTGTCT 167677
Query 36384 CTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAA 36443
| || ||||| || | ||| | || |||| ||| ||| || ||||| || |
Sbjct 167678 CAATTGCATTGAATAAGAAGTCACGCTGCTTTGCATCTCTAATATAAGTTTCAATTAATA 167737
Query 36444 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAG 36503
||||| ||||| || | ||||| || || ||||| ||||| ||||| ||| ||
Sbjct 167738 TTGAGTACATCTCCGAGTGTACATTTTCCATAGCAATTTGGAATCCATAGAAGAATCGAG 167797
Query 36504 CCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 36563
| || | || || ||||| || || || || |||||| ||||| || || || |
Sbjct 167798 CTTCTGGAACTTGAACTTCCTGACTGAAACGCTCAATTAAATTCTCATTTACGATGCCAT 167857
Query 36564 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT-ATTTTTCGTTTGGTGTTAGT 36622
|| || ||||| || || |||||||| ||||||| | | | | | | ||
Sbjct 167858 CAGATGCAGCAAAGAAAGCTAATACATGCGAGATAAAATGACGCTCTGAATCCT-TGAGA 167916
Query 36623 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 36675
|| ||||| || | |||||||| |||| ||| ||||| || |||||||| ||
Sbjct 167917 TTGTTCCAGTCTTCCATATCTTTTGATAAATCGACTTCCTCGACTGTCCAGAA 167969
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657958688161000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |