Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq343 500 1e-136 seq119 311 1e-79 >seq343 Length=103200 Score = 500 bits (554), Expect = 1e-136 Identities = 1061/1575 (67%), Gaps = 35/1575 (2%) Strand=Plus/Plus Query 64860 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 64919 |||||||| || |||| || |||||||| ||||| || || | |||||||||||||| Sbjct 5041 GCGGGTTTTGTTCGTAAGTAATACATTCCAGTTTTCAGTCCCATTTTCCATCCGTAAAAA 5100 Query 64920 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 64979 || || ||||| ||| |||| | || || |||| ||| ||||| | || |||||| Sbjct 5101 TGAATGGACGTTAATTTCCCATAATTGGGTTCAGCTACATGAATATTAAACGACTGACTT 5160 Query 64980 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 65039 || || || || ||||| | || |||| ||||| || ||||| | ||||||| Sbjct 5161 TGGTCTATAAAAGCTCCACGATCGGCAGACATTTGAATTTGTGTCTTGACGGAAATTTCC 5220 Query 65040 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG-----TATTCTGAATGG 65094 |||| |||||||| | || ||||| ||||||| |||| || |||| || | Sbjct 5221 CAAACCGTTTTATATATATTTTTTATATCATCTGGAA--TTTGCTCAATAGTCTGTATTG 5278 Query 65095 ATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 65154 | ||| || ||| ||||| | ||||| || || |||| |||||| | || || | Sbjct 5279 AACCATTATTTGCAATAATTTTGTTCTTCATATCGTCATCCCATAAACCACGTTCAGTCA 5338 Query 65155 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 65214 || | | | ||||| ||||||| ||||||||||| ||| | || | ||| | | Sbjct 5339 AATCCTTGATAAGATGGTGATTAACAACTTGAAATTCACCACTGAGAACACGACGATTAT 5398 Query 65215 AAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 65274 ||| |||||| || || ||||| | ||||||||| |||||||| ||||||||||||| Sbjct 5399 AAACATTACTTGTGTAAGGTTCAAAGCTCTCATTATTACCCAAAATCTGAGCAGTTGATG 5458 Query 65275 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTT 65334 | |||||||| ||||| | || | ||||| ||||| | || | ||||| |||| Sbjct 5459 CTGTCGGCATTGGTGCAATTAAGAGTGAATTTCGGAGACCAAACTTTTTAATTTTTTCTT 5518 Query 65335 TTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAA 65394 |||||| |||||||| ||| | ||| | || ||||| | Sbjct 5519 TTAGAGCTTCCCAATCCCACAAATCGGTGGGAGTCTTATCCCACATATCATATTGTAATA 5578 Query 65395 TACCGTT--ACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 65452 ||| || || || || |||| | || || || |||||||| | || |||| Sbjct 5579 CACCTTTTGAC-ACCGGAC-ATCCATCGTAAGTCTCATATGGTCCCAATTGTTCTGCTAA 5636 Query 65453 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC 65512 |||||| || | ||| |||||||| |||||||| ||||| || || | | ||||| || Sbjct 5637 TTCACAGCTGGACTCCAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAAATT 5696 Query 65513 TTGTGCTTCCAGGCTA---TCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCC 65569 || ||||| | || ||| |||| | | | |||||| || ||||| ||||| Sbjct 5697 TTTCGCTTC---GTTAGATTCATATGGCATTCTCATCAAAATAAAAGCATCTGCCAATCC 5753 Query 65570 TTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGG 65629 |||||| ||||| || ||||| | |||||| || || || ||||||| || || Sbjct 5754 TTGAACTCCAATTCCAATAGGACGATGTCTAAAGTTTGACCGTTTAGCTTCTTCAACGGG 5813 Query 65630 ATAATAATTAATATCTATAATTTTATTGAGAT---TTCTGACAATTACTTTGACCACATC 65686 ||| ||||| | | ||||||||||| | || || |||| ||| |||| || || Sbjct 5814 ATAGTAATTTACGTTAATAATTTTATTCAAATTCCTTGTGACTATT--TTTG-TAACTTC 5870 Query 65687 CTTCAGTTTGAGAAAATCAAATCGCTCATCTATT-------ACAAACATGTTCAATGCAA 65739 ||||| |||| |||| ||| || ||| || ||| |||||||| || || |||| Sbjct 5871 CTTCAATTTGTGAAAGTCATAT-TCTCTTCGATTTTGTTTGACAAACATATTTAAAGCAA 5929 Query 65740 CAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGC 65799 ||||| | ||||||||| || || |||| | | |||||||| ||| || || | Sbjct 5930 TTGATGCTAAATTACAAACTGCAACTTCATCCTTACTTGAATATTGTACTATTTCCGTAC 5989 Query 65800 AAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 65859 | | ||| ||| || || || | ||| |||||||| || ||| || | || Sbjct 5990 ATAAATTCGAACAACGTATTGTCCCAAGATTCTGTTGATTTGATTTCCGGTTGCATGAAT 6049 Query 65860 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 65919 ||||||| || || | || ||||||||||| | |||| || || || || ||| | Sbjct 6050 CCTTATACAGCATATAAGGTGTACCAGTTTCTACTTGAGCCTCAATGATTGCGAACCACA 6109 Query 65920 CGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATC 65979 || | ||||||| | | | || || |||| ||| || | ||| | | Sbjct 6110 AATCTTGTGCCTTTACTTGACGAATATACCTTCCTTCTGCTTCATAGCCTTCATAAAGTT 6169 Query 65980 GTTCGAACTCGTCTCCCCAAAC-ATTGTCCAA-TCCAGGACATTCATCCGGACACATCAA 66037 | || || ||| || || ||| || || |||| || |||||||| || Sbjct 6170 TCACAAATTC--CTCACCGTACGATTCAAAAAGACCGGGACTACTATTAGGACACATTAA 6227 Query 66038 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 66097 |||||| | | | | | || || ||| || | ||| |||||||| | || Sbjct 6228 TGACCACATTTCATTGTTTTCAACCCGACGCATGAACAAATCTGGAATCCACAATGCATA 6287 Query 66098 AAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 66157 ||| | ||||| | ||| ||| || ||||| ||||| || || | ||| || || | Sbjct 6288 AAACATGTCTCTAGCTCTGACTTCTTCTTTTCCAGTATTTTTCTTTAAATCCAGAAATTC 6347 Query 66158 CATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 66217 | ||||||| |||||| |||||||| ||||| || | | || || ||||| ||||| Sbjct 6348 AAAAATATCACCATGCCAAGGTTCCAAATATATTGCAAACGCGCCTGGACGTTTATTTCC 6407 Query 66218 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 66277 || || || | || | ||||| ||||| || ||||| |||||||||| || ||||| Sbjct 6408 ACCTTGGTCAACATAACGTGCGGTATTATTGTATACTCTTAACATTGGAACAAGGCCATT 6467 Query 66278 GGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAG 66337 || | ||||| || || | ||||| |||| |||| ||||| | || | Sbjct 6468 TGAAATCCCATTTGTACCAGCTATATATGTTCCTTTTGCTCGAATGCAATGAACATTAAC 6527 Query 66338 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 66397 ||| ||||| ||||| ||| |||||||||||| ||||||| |||||||| || || Sbjct 6528 ACCAATTCCACCTGCTGATTTGCTTATTAATGCGCATTGTTTTAATGTATCATAAATACC 6587 Query 66398 CTCTATACTATCATC 66412 ||| ||| |||||| Sbjct 6588 CTCAATAGAATCATC 6602 >seq119 Length=197918 Score = 311 bits (344), Expect = 1e-79 Identities = 574/833 (69%), Gaps = 13/833 (2%) Strand=Plus/Plus Query 35851 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACC 35910 |||||||||||| | ||||| |||||||| || | |||||| || || || || || Sbjct 167142 AGACATAACTCCACTCTTTTGATATTCACCAACCTTTCGTTCGAAGAAGTTTGTCTTGCC 167201 Query 35911 TTCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAA 35970 || | ||| ||| |||||| || ||||||||| | |||||| | ||| | || Sbjct 167202 CTCAAGTGAAATAAATTCCATAAATGAGAATGGATTTTTGGTATTATAGACTTTATCAAG 167261 Query 35971 TCCCAATTCA-GAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCAC 36029 |||||||||| ||| ||| ||| || ||||||||||| || |||| | |||| Sbjct 167262 TCCCAATTCACCCAATAAAT-GATCAGCAACAAATTCTATGTACTGAGTCATTAAATCAC 167320 Query 36030 AATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGA 36089 ||||||| || | | ||||||||||| || |||| | |||||| | ||||| | Sbjct 167321 AATTCATGCCCAACATCTTAACTGGAAGTGCGTCAGTTAAAAATTCCTTCTCAATTTTTA 167380 Query 36090 CCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAAT---AAATGTT 36146 | || ||||| ||||| | |||| |||| | | ||||| | | | | ||||| Sbjct 167381 CAGCCTCTGTGATAATTTCAACTACTCTTTCCT---TTGGTGGCTTCTGTTCAAGATGTT 167437 Query 36147 TAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGG 36206 | |||| || ||||| || || | || || || |||||||| ||| | ||| || | Sbjct 167438 TGTACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTG 167497 Query 36207 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATC 36266 |||| || | || ||||||| || | ||| |||| ||||||||| | ||||| | Sbjct 167498 AAAATGTCAACCCTGGCATTAATCCTCTCTTCTTAATCCAAAATATAGCTGCAAAGCTAC 167557 Query 36267 CAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC 36326 || ||||||||| ||||| || || ||||| ||||||| || || ||| | ||| Sbjct 167558 CACTAAAGAAAATCCCTTCGACAGCTGCAAAAGCAATAACTCGTTCACCAAAGTTTGCAT 167617 Query 36327 T-GTCATG--TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 36383 | | || |||||| ||| |||||| || |||||||| || ||||| || | ||||| Sbjct 167618 TCTTGCTGGATATCCAATTTAAAGCCCAGTCAGCCTTCTTCTTAACACATGGAAGTGTCT 167677 Query 36384 CTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAA 36443 | || ||||| || | ||| | || |||| ||| ||| || ||||| || | Sbjct 167678 CAATTGCATTGAATAAGAAGTCACGCTGCTTTGCATCTCTAATATAAGTTTCAATTAATA 167737 Query 36444 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAG 36503 ||||| ||||| || | ||||| || || ||||| ||||| ||||| ||| || Sbjct 167738 TTGAGTACATCTCCGAGTGTACATTTTCCATAGCAATTTGGAATCCATAGAAGAATCGAG 167797 Query 36504 CCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 36563 | || | || || ||||| || || || || |||||| ||||| || || || | Sbjct 167798 CTTCTGGAACTTGAACTTCCTGACTGAAACGCTCAATTAAATTCTCATTTACGATGCCAT 167857 Query 36564 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT-ATTTTTCGTTTGGTGTTAGT 36622 || || ||||| || || |||||||| ||||||| | | | | | | || Sbjct 167858 CAGATGCAGCAAAGAAAGCTAATACATGCGAGATAAAATGACGCTCTGAATCCT-TGAGA 167916 Query 36623 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 36675 || ||||| || | |||||||| |||| ||| ||||| || |||||||| || Sbjct 167917 TTGTTCCAGTCTTCCATATCTTTTGATAAATCGACTTCCTCGACTGTCCAGAA 167969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657958688161000