Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq343 518 5e-142 seq119 291 1e-73 >seq343 Length=103200 Score = 518 bits (574), Expect = 5e-142 Identities = 1071/1576 (68%), Gaps = 37/1576 (2%) Strand=Plus/Plus Query 78739 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAA 78798 |||||||| || |||| || |||||||| ||||| || || | |||||||||| ||| Sbjct 5041 GCGGGTTTTGTTCGTAAGTAATACATTCCAGTTTTCAGTCCCATTTTCCATCCGTAAAAA 5100 Query 78799 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 78858 || || ||||| ||| |||| | || || |||| ||| ||||| | || |||||| Sbjct 5101 TGAATGGACGTTAATTTCCCATAATTGGGTTCAGCTACATGAATATTAAACGACTGACTT 5160 Query 78859 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 78918 || || || || ||||| | || |||| ||||| || ||||| | ||||||| Sbjct 5161 TGGTCTATAAAAGCTCCACGATCGGCAGACATTTGAATTTGTGTCTTGACGGAAATTTCC 5220 Query 78919 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG-----TATTCTGAATGG 78973 |||| |||||||| | || ||||| ||||||| |||| || |||| || | Sbjct 5221 CAAACCGTTTTATATATATTTTTTATATCATCTGGAA--TTTGCTCAATAGTCTGTATTG 5278 Query 78974 ATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTA 79033 | ||| || ||| ||||| | ||||| || || |||| |||||| | || || | Sbjct 5279 AACCATTATTTGCAATAATTTTGTTCTTCATATCGTCATCCCATAAACCACGTTCAGTCA 5338 Query 79034 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 79093 || | | | ||||| ||||||| ||||||||||| ||| | || | ||| | | Sbjct 5339 AATCCTTGATAAGATGGTGATTAACAACTTGAAATTCACCACTGAGAACACGACGATTAT 5398 Query 79094 AAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATG 79153 ||| |||||| || || ||||| | |||||||| |||||||| ||||||||||||| Sbjct 5399 AAACATTACTTGTGTAAGGTTCAAAGCTCTCATTATTACCCAAAATCTGAGCAGTTGATG 5458 Query 79154 CCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTT 79213 | || ||||| ||||| | || | ||||| ||||| | | | ||||| |||| Sbjct 5459 CTGTCGGCATTGGTGCAATTAAGAGTGAATTTCGGAGACCAAACTTTTTAATTTTTTCTT 5518 Query 79214 TTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAA 79273 |||||| |||||||||||| | ||| | || || ||| | ||||||||||| | Sbjct 5519 TTAGAGCTTCCCAATCCCACAAATCGGTGGGAGTCTTATCCCACATATCATATTGTAATA 5578 Query 79274 TACCGTT--ACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAA 79331 ||| || || | || | |||| ||| || ||||| ||||| | ||| ||||| Sbjct 5579 CACCTTTTGAC-ACCGGA-CATCCATCGTAAGTCTCATATGGTCCCAATTGTTCTGCTAA 5636 Query 79332 TTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATC 79391 |||||| || | ||| ||||| || |||||||| ||||| || || | | ||| | || Sbjct 5637 TTCACAGCTGGACTCCAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAAATT 5696 Query 79392 TTGTGCTTC-TAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTT 79450 || ||||| | | | ||| |||| | | | |||||| || ||||| ||||||| Sbjct 5697 TTTCGCTTCGTTAGAT-TCATATGGCATTCTCATCAAAATAAAAGCATCTGCCAATCCTT 5755 Query 79451 GAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGAT 79510 |||| ||||| || ||||| | |||||| || || || ||||||| || |||| Sbjct 5756 GAACTCCAATTCCAATAGGACGATGTCTAAAGTTTGACCGTTTAGCTTCTTCAACGGGAT 5815 Query 79511 AATAATTAATATCTATAATTTTATTGAGATTCC---TGACTATTACTTTGACCACATCCT 79567 | ||||| | | ||||||||||| | ||||| |||||||| |||| || |||| Sbjct 5816 AGTAATTTACGTTAATAATTTTATTCAAATTCCTTGTGACTATT--TTTG-TAACTTCCT 5872 Query 79568 TTAGTTTGAGAAAATCAAA---TCGTCCA---TCTATTACAAACATGTTCAACGCGACAG 79621 | | |||| |||| ||| | || || | | | | |||||||| || || || | | Sbjct 5873 TCAATTTGTGAAAGTCATATTCTCTTCGATTTTGTTTGACAAACATATTTAAAGCAATTG 5932 Query 79622 ATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGA 79681 |||| | ||||||||| || || |||| | | |||||||| |||||| || || | Sbjct 5933 ATGCTAAATTACAAACTGCAACTTCATCCTTACTTGAATATTGTACTATTTCCGTACATA 5992 Query 79682 GGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 79741 || ||| || || || | ||| |||||||| || ||| || | ||||| Sbjct 5993 AATTCGAACAACGTATTGTCCCAAGATTCTGTTGATTTGATTTCCGGTTGCATGAATCCT 6052 Query 79742 TATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGA 79801 |||| || || | || ||||||||||| | |||| || || || || ||| | Sbjct 6053 TATACAGCATATAAGGTGTACCAGTTTCTACTTGAGCCTCAATGATTGCGAACCACAAAT 6112 Query 79802 CTCGAGCCTTTATTATAGACTTGTATCTCTT--TTCTCTTTCGTATTGTGTATATAATCG 79859 || | ||||||| | ||| ||| ||| |||| ||| || | ||| | | Sbjct 6113 CTTGTGCCTTTA--CTTGACGAATATACCTTCCTTCTGCTTCATAGCCTTCATAAAGTTT 6170 Query 79860 TTCGAACTCGTCTCCCCAAAC-ATCGTCTAA---TCCAGGACATTCGTCAGGACACATCA 79915 | || || ||| || || || || || || |||| | ||||||||| | Sbjct 6171 CACAAATTC--CTCACCGTACGAT--TCAAAAAGACCGGGACTACTATTAGGACACATTA 6226 Query 79916 ACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 79975 | |||||| | ||| | | || || ||| || | ||| |||||||| | || Sbjct 6227 ATGACCACATTTCATTGTTTTCAACCCGACGCATGAACAAATCTGGAATCCACAATGCAT 6286 Query 79976 TAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 80035 ||| | ||||| | ||| || || ||||| ||||| || || | ||| || || Sbjct 6287 AAAACATGTCTCTAGCTCTGACTTCTTCTTTTCCAGTATTTTTCTTTAAATCCAGAAATT 6346 Query 80036 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTC 80095 | | ||||||| |||||| |||||||| ||||| || | | || || ||||| |||| Sbjct 6347 CAAAAATATCACCATGCCAAGGTTCCAAATATATTGCAAACGCGCCTGGACGTTTATTTC 6406 Query 80096 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 80155 | || || || | || | ||||| ||||| || ||||| |||||||||| || |||| Sbjct 6407 CACCTTGGTCAACATAACGTGCGGTATTATTGTATACTCTTAACATTGGAACAAGGCCAT 6466 Query 80156 TGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATA 80215 | || | ||||| || || | ||||| |||| | || ||||| | || | Sbjct 6467 TTGAAATCCCATTTGTACCAGCTATATATGTTCCTTTTGCTCGAATGCAATGAACATTAA 6526 Query 80216 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 80275 ||| ||||| ||||| ||| |||||||||||| ||||||| |||||||| || | Sbjct 6527 CACCAATTCCACCTGCTGATTTGCTTATTAATGCGCATTGTTTTAATGTATCATAAATAC 6586 Query 80276 CCTCTATGCTATCATC 80291 |||| || |||||| Sbjct 6587 CCTCAATAGAATCATC 6602 >seq119 Length=197918 Score = 291 bits (322), Expect = 1e-73 Identities = 572/835 (69%), Gaps = 17/835 (2%) Strand=Plus/Plus Query 49653 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 49712 |||||||||||| | ||||| |||||||| || | |||||| || || || || || Sbjct 167142 AGACATAACTCCACTCTTTTGATATTCACCAACCTTTCGTTCGAAGAAGTTTGTCTTGCC 167201 Query 49713 TTCCAATGATATATTTTCCATGAAATCA-AACGGATTGGTAACATTATAAAtttttttAA 49771 || | ||| ||| |||||| |||| | || ||||| | |||||| | ||| | || Sbjct 167202 CTCAAGTGAAATAAATTCCAT-AAATGAGAATGGATTTTTGGTATTATAGACTTTATCAA 167260 Query 49772 ATCCCAATTCA-GAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCA 49830 |||||||||| ||| ||| ||| || ||||||||||| || |||| | ||| Sbjct 167261 GTCCCAATTCACCCAATAAAT-GATCAGCAACAAATTCTATGTACTGAGTCATTAAATCA 167319 Query 49831 CAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGAT 49890 |||||||| || | | ||||||||||| || |||| | |||||| | ||||| | Sbjct 167320 CAATTCATGCCCAACATCTTAACTGGAAGTGCGTCAGTTAAAAATTCCTTCTCAATTTTT 167379 Query 49891 ACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAAT---AAATGT 49947 || || ||||| ||||| | ||| | ||| | ||||| | | | | |||| Sbjct 167380 ACAGCCTCTGTGATAAT---TTCAACTACTCTTTCCTTTGGTGGCTTCTGTTCAAGATGT 167436 Query 49948 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTG 50007 || |||| || ||||| || || | || || || |||||||| ||| ||||| || Sbjct 167437 TTGTACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTT 167496 Query 50008 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC 50067 ||||| || | || ||||||| || | ||| |||| ||||||||| | ||||| Sbjct 167497 GAAAATGTCAACCCTGGCATTAATCCTCTCTTCTTAATCCAAAATATAGCTGCAAAGCTA 167556 Query 50068 CCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG 50127 ||| |||||| || ||||| || || ||||| |||| || || || ||| | | || Sbjct 167557 CCACTAAAGAAAATCCCTTCGACAGCTGCAAAAGCAATAACTCGTTCACCAAAGTTTGCA 167616 Query 50128 CT-GTCATG--TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 50184 | | || |||||| ||| |||||| || |||||||| || ||||| || | || Sbjct 167617 TTCTTGCTGGATATCCAATTTAAAGCCCAGTCAGCCTTCTTCTTAACACATGGAAGTGTC 167676 Query 50185 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA 50244 || || ||||| || | ||| | || |||| ||| |||||| || || || Sbjct 167677 TCAATTGCATTGAATAAGAAGTCACGCTGCTTTGCATCTCTAATATAAGTTTCAATTAAT 167736 Query 50245 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA 50304 | ||||| ||||| || | ||||| || || || || ||||| ||||| ||| | Sbjct 167737 ATTGAGTACATCTCCGAGTGTACATTTTCCATAGCAATTTGGAATCCATAGAAGAATCGA 167796 Query 50305 GCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCG 50364 || || | || || ||||| || || || ||| |||||| ||||| || || || Sbjct 167797 GCTTCTGGAACTTGAACTTCCTGACTGAAACGCTCAATTAAATTCTCATTTACGATGCCA 167856 Query 50365 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGT--GTTA 50422 ||| || ||||| || || |||||||| |||||||| || || | | | Sbjct 167857 TCAGATGCAGCAAAGAAAGCTAATACATGCGAGATAAAATGACGCTC--TGAATCCTTGA 167914 Query 50423 GTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAA 50477 | || ||||| || | |||||||| |||| ||| ||||| || |||||||| || Sbjct 167915 GATTGTTCCAGTCTTCCATATCTTTTGATAAATCGACTTCCTCGACTGTCCAGAA 167969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718035138181000