Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq119 370 1e-97 seq205 93.3 4e-14 >seq119 Length=197918 Score = 370 bits (410), Expect = 1e-97 Identities = 636/918 (69%), Gaps = 14/918 (2%) Strand=Plus/Plus Query 13496 ATTCAACTTTATAATATTCAATAAAAA------CTAAAAATCAACATCTAATGAAAAAAC 13549 ||||| ||||| || || |||| ||| ||| |||||| | ||||||| ||||| Sbjct 167069 ATTCA--TTTATGATGTTAAATAGAAATTATCACTAGAAATCAGCGTCTAATGTGAAAAC 167126 Query 13550 ATTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAA 13609 | || | |||| ||||| || | ||||||||||||| ||| || ||| || Sbjct 167127 TTGTTCTTGACGACTAGACATAACTCCACTCTTTTGATATTCACCAACCTTTCGTTCGAA 167186 Query 13610 GAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACAT 13669 |||||| || || || || ||||| ||| ||||||||| ||||||||| | | | Sbjct 167187 GAAGTTTGTCTTGCCCTCAAGTGAAATAAATTCCATAAATGAGAATGGATTTTTGGTATT 167246 Query 13670 AAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTG 13729 | | ||||||||| || | ||| | ||| |||||||| ||| || || || || Sbjct 167247 ATAGACTTTATCAAGTCCCAATTCACCCAATAAATGATCAGCAACAAATTCTATGTACTG 167306 Query 13730 AGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTC 13789 || |||||||||||||||||| || | | || || |||| | | ||||||||||| Sbjct 167307 AGTCATTAAATCACAATTCATGCCCAACATCTTAACTGGAAGTGCGTCAGTTAAAAATTC 167366 Query 13790 TTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCT--CATTAGAAGGAGGA 13847 || || || ||||||||| | ||||| || | || ||| | || | || Sbjct 167367 CTTCTCAATTTTTACAGCCTCTGTGATAAT--TTCAACTACTCTTTCCTTTGGTGGCTTC 167424 Query 13848 TATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTA 13907 | || |||||||| | ||||| || ||||| |||| |||||| || || ||||| | Sbjct 167425 TGTTCAAGATGTTTGTACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAA 167484 Query 13908 ATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATT 13967 |||||||| ||||||||||| || |||||||| ||||||| || || | ||||||||| Sbjct 167485 ATAAGTTCATTTGAAAATGTCAACCCTGGCATTAATCCTCTCTTCTTAATCCAAAATATA 167544 Query 13968 GCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCT 14027 || ||||| || |||||| || || || || || ||||| || || | |||||| Sbjct 167545 GCTGCAAAGCTACCACTAAAGAAAATCCCTTCGACAGCTGCAAAAGCAATAACTCGTTCA 167604 Query 14028 CCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATA 14087 ||||| ||| || ||| | |||||||| ||| |||||| |||| || || |||| | Sbjct 167605 CCAAAGTTTGCATTCTTGCTGGATATCCAATTTAAAGCCCAGTCAGCCTTCTTCTTAACA 167664 Query 14088 AAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTAT 14147 | | ||| ||||| ||||| ||||| | || || || | | | ||| || Sbjct 167665 CATGGAAGTGTCTCAATTGCATTGAATAAGAAGTCACGCTGCTTTGCATCTCTAATATAA 167724 Query 14148 GTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCA 14207 || ||||| | || ||||| || ||||||| ||||||||||| || || || ||| Sbjct 167725 GTTTCAATTAATATTGAGTACATCTCCGAGTGTACATTTTCCATAGCAATTTGGAATCCA 167784 Query 14208 TAAAAGCATCTAGCTTCCGACCATTGTACTTCC-GAGTAAAATCTTTCGGCCAAATTTTC 14266 || ||| ||| |||||| | ||| |||||| || | ||| | || ||||| || Sbjct 167785 TAGAAGAATCGAGCTTCTGGAACTTGAACTTCCTGACTGAAA-CGCTCAATTAAATTCTC 167843 Query 14267 ATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTC 14326 ||| || || |||||| || ||||| || || |||| | ||||| | |||| Sbjct 167844 ATTTACGATGCCATCAGATGCAGCAAAGAAAGCTAATACATGCGAGATAAAATGACGCTC 167903 Query 14327 TTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGT 14386 | || ||||| || ||||| || | ||| || || | ||| ||||| || ||||| Sbjct 167904 TGAATCCTTGAGATTGTTCCAGTCTTCCATATCTTTTGATAAATCGACTTCCTCGACTGT 167963 Query 14387 CCAAAAACTAGCGACAGC 14404 ||| || || || |||| Sbjct 167964 CCAGAAGCTGGCTTCAGC 167981 >seq205 Length=143123 Score = 93.3 bits (102), Expect = 4e-14 Identities = 126/173 (73%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 13877 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 13936 ||| |||| ||| || || ||||||| ||| |||||||||||||| || ||||| || Sbjct 86382 AAAGTCACGATGTAGTCCTTCATCTCGTGAAATGAGTTCGTTTGAAAAAGTCAATCCAGG 86323 Query 13937 CATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCG-GAAAAGAATATTC 13995 ||| | |||||| ||||||| | |||| ||||| ||||| | | |||| ||||| Sbjct 86322 CATTAGTCCTCGCTTTTTTAGCTAAAAGATTGCTGCAAAGCTTCTGCTAAAAAAATATAA 86263 Query 13996 CCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14048 || || || ||||| || || | || ||| || || ||| ||||| ||| Sbjct 86262 TTTCTACAGCGGCAAATGCAATAATTCTTTCACCCAA-TCTGCCTTTTTCTTC 86211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479571938485000