Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq119 356 2e-93 seq205 91.5 1e-13 >seq119 Length=197918 Score = 356 bits (394), Expect = 2e-93 Identities = 633/919 (69%), Gaps = 16/919 (2%) Strand=Plus/Plus Query 13284 ATTCAACTTTATAATATTTAATAAAAA------CTAAAAATCAACATCTAATGAAAAAAC 13337 ||||| ||||| || || |||| ||| ||| |||||| | ||||||| ||||| Sbjct 167069 ATTCA--TTTATGATGTTAAATAGAAATTATCACTAGAAATCAGCGTCTAATGTGAAAAC 167126 Query 13338 ATTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAA 13397 | || | |||| ||||| || | ||||||||||||| ||| || ||| || Sbjct 167127 TTGTTCTTGACGACTAGACATAACTCCACTCTTTTGATATTCACCAACCTTTCGTTCGAA 167186 Query 13398 AAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACAT 13457 ||||| || || || || ||||| ||| ||||||||| |||||||||| | | | Sbjct 167187 GAAGTTTGTCTTGCCCTCAAGTGAAATAAATTCCATAAATGAGAATGGATTTTTGGTATT 167246 Query 13458 AAACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTG 13517 | | ||||||||| || | ||| ||||| |||||||| ||| || || || || Sbjct 167247 ATAGACTTTATCAAGTCCCAATTCACCCAATAAATGATCAGCAACAAATTCTATGTACTG 167306 Query 13518 AGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTC 13577 || |||||||||||||||||| || | | || || |||| | | |||||||||||| Sbjct 167307 AGTCATTAAATCACAATTCATGCCCAACATCTTAACTGGAAGTGCGTCAGTTAAAAATTC 167366 Query 13578 TTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAA---TGTCATTAGAAGGAGG 13634 || || || |||||||| | | ||||| | || | | || || | || Sbjct 167367 CTTCTCAATTTTTACAGCCTC---TGTGATAATTTCAACTACTCTTTCCTTTGGTGGCTT 167423 Query 13635 ATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACT 13694 | || |||||||| | ||||| || ||||| |||| |||||| || || ||||| Sbjct 167424 CTGTTCAAGATGTTTGTACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGA 167483 Query 13695 AATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATAT 13754 ||||||||| ||||||||||| || |||||||| ||||||| || || | ||||||||| Sbjct 167484 AATAAGTTCATTTGAAAATGTCAACCCTGGCATTAATCCTCTCTTCTTAATCCAAAATAT 167543 Query 13755 TGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTC 13814 || || || || |||||| || || || || || ||||| || || | |||||| Sbjct 167544 AGCTGCAAAGCTACCACTAAAGAAAATCCCTTCGACAGCTGCAAAAGCAATAACTCGTTC 167603 Query 13815 TCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAAT 13874 ||||| ||| || ||| | |||||||| ||| |||||| |||| || || |||| Sbjct 167604 ACCAAAGTTTGCATTCTTGCTGGATATCCAATTTAAAGCCCAGTCAGCCTTCTTCTTAAC 167663 Query 13875 AAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTA 13934 | | | ||| || |||||||||||||| || || || | | | ||| || Sbjct 167664 ACATGGAAGTGTCTCAATTGCATTGAATAAGAAGTCACGCTGCTTTGCATCTCTAATATA 167723 Query 13935 TGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACC 13994 || ||||| | || ||||| || ||||||| ||||| ||||| || || || || Sbjct 167724 AGTTTCAATTAATATTGAGTACATCTCCGAGTGTACATTTTCCATAGCAATTTGGAATCC 167783 Query 13995 ATAAAAACATCTAGCTTCTGACCATTGTACCTCC-GAGTAAAATCTTTCTGCCAAGTTTT 14053 ||| || ||| |||||||| ||| || ||| || | ||| | || || || | Sbjct 167784 ATAGAAGAATCGAGCTTCTGGAACTTGAACTTCCTGACTGAAA-CGCTCAATTAAATTCT 167842 Query 14054 CATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCT 14113 |||| || || |||||| || ||||| || || |||| | ||||| | ||| Sbjct 167843 CATTTACGATGCCATCAGATGCAGCAAAGAAAGCTAATACATGCGAGATAAAATGACGCT 167902 Query 14114 CTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTG 14173 || || ||||| || ||||| || | | ||| || || | ||| ||||| || |||| Sbjct 167903 CTGAATCCTTGAGATTGTTCCAGTCTTCCATATCTTTTGATAAATCGACTTCCTCGACTG 167962 Query 14174 TCCAAAAACTAGCGACAGC 14192 |||| || || || |||| Sbjct 167963 TCCAGAAGCTGGCTTCAGC 167981 >seq205 Length=143123 Score = 91.5 bits (100), Expect = 1e-13 Identities = 125/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 13665 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 13724 ||| |||| ||| || || ||||||| ||| |||||||||||||| || ||||| || Sbjct 86382 AAAGTCACGATGTAGTCCTTCATCTCGTGAAATGAGTTCGTTTGAAAAAGTCAATCCAGG 86323 Query 13725 CATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCG-GAAAAGAATATTC 13783 ||| | |||||| ||||||| | |||| ||||| || || || | |||| ||||| Sbjct 86322 CATTAGTCCTCGCTTTTTTAGCTAAAAGATTGCTGCAAAGCTTCTGCTAAAAAAATATAA 86263 Query 13784 CCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTT 13835 || || || ||||| || || | || ||| || || ||| ||||| || Sbjct 86262 TTTCTACAGCGGCAAATGCAATAATTCTTTCACCCAA-TCTGCCTTTTTCTT 86212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478433109081000