Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq343 491 6e-134 seq119 260 2e-64 >seq343 Length=103200 Score = 491 bits (544), Expect = 6e-134 Identities = 1080/1608 (67%), Gaps = 41/1608 (3%) Strand=Plus/Plus Query 70792 TTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCT 70851 ||||| | ||||||||||| | | | |||| ||| || |||| || ||||| || Sbjct 5011 TTGTCAACAGTAAACTGAATAGCATTTGCAGCGGGTTTTGTTCGTAAGTAATACATTCCA 5070 Query 70852 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGA 70911 ||||| || || | |||||||||||||||| || ||||| ||| ||| | || Sbjct 5071 GTTTTCAGTCCCATTTTCCATCCGTAAAAATGAATGGACGTTAATTTCCCATAATTGGGT 5130 Query 70912 TCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 70971 || |||| |||||||| | |||||||||||| || || || ||||| | || |||| | Sbjct 5131 TCAGCTACATGAATATTAAACGACTGACTTTGGTCTATAAAAGCTCCACGATCGGCAGAC 5190 Query 70972 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 71031 |||| || ||||| | ||||||||||| |||||||| | || ||||| Sbjct 5191 ATTTGAATTTGTGTCTTGACGGAAATTTCCCAAACCGTTTTATATATATTTTTTATATCA 5250 Query 71032 TCTGGAAGGTTTG-----TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGA 71086 ||||||| |||| || |||| || || ||| || ||||||||| | || || | Sbjct 5251 TCTGGAA--TTTGCTCAATAGTCTGTATTGAACCATTATTTGCAATAATTTTGTTCTTCA 5308 Query 71087 TCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTT 71146 | || |||| |||||| | || || ||| | | | ||||| ||||||| |||| Sbjct 5309 TATCGTCATCCCATAAACCACGTTCAGTCAAATCCTTGATAAGATGGTGATTAACAACTT 5368 Query 71147 GAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACT 71206 ||||||| ||| | || | |||| | |||| |||||| || || ||||| | || Sbjct 5369 GAAATTCACCACTGAGAACACGACGATTATAAACATTACTTGTGTAAGGTTCAAAGCTCT 5428 Query 71207 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTAT 71266 ||||||| |||||||| |||||||||||||| |||||||| ||||| | || || || Sbjct 5429 CATTATTACCCAAAATCTGAGCAGTTGATGCTGTCGGCATTGGTGCAATTAAGAGTGAAT 5488 Query 71267 TTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATG 71326 ||| |||||| | ||||| |||||||||| |||||||| ||| | || || || Sbjct 5489 TTCGGAGACCAAACTTTTTAATTTTTTCTTTTAGAGCTTCCCAATCCCACAAAT-CGGTG 5547 Query 71327 GTACAACNNNNNNNNNNNNNNNNNNNNNNATGC-CGTT---ACTAGCGTATGATCCTGCA 71382 | | | || | | || || | || | |||| | Sbjct 5548 GGA-GTCTTATCCCACATATCATATTGTAATACACCTTTTGAC-ACCGGA-CATCCATCG 5604 Query 71383 TATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAA 71442 || || || |||||||| || ||| |||| |||||| || | ||| ||||| |||||| Sbjct 5605 TAAGTCTCATATGGTCCCAATTGTTCTGCTAATTCACAGCTGGACTCCAATGCACCATAA 5664 Query 71443 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTA---TCAAATGGA 71499 ||||| ||||| || || | | ||| | || || ||||| | || ||| |||| Sbjct 5665 TAAATTGTTTCAAATATTTGTTGATTTAAATTTTTCGCTTC---GTTAGATTCATATGGC 5721 Query 71500 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGT 71559 | | | |||||| || ||||| ||||||||||| ||||| || ||||| | ||| Sbjct 5722 ATTCTCATCAAAATAAAAGCATCTGCCAATCCTTGAACTCCAATTCCAATAGGACGATGT 5781 Query 71560 CTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 71619 || || || || ||||||| || ||||| ||||| | | ||||||||||| Sbjct 5782 CTAAAGTTTGACCGTTTAGCTTCTTCAACGGGATAGTAATTTACGTTAATAATTTTATTC 5841 Query 71620 AGAT---TTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCA 71676 | || || |||||||| |||| || ||||| | |||| |||| ||| || || | Sbjct 5842 AAATTCCTTGTGACTATT--TTTG-TAACTTCCTTCAATTTGTGAAAGTCATAT-TCTCT 5897 Query 71677 TCTATT-------ACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTC 71729 || ||| ||||||| || || |||| ||||| | ||||||||| || || || Sbjct 5898 TCGATTTTGTTTGACAAACATATTTAAAGCAATTGATGCTAAATTACAAACTGCAACTTC 5957 Query 71730 ATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAA 71789 || | | |||||||| ||||| || || | ||| ||| || || || | Sbjct 5958 ATCCTTACTTGAATATTGTACTATTTCCGTACATAAATTCGAACAACGTATTGTCCCAAG 6017 Query 71790 ATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGT 71849 ||| |||||||| || ||| || | ||||||||| || ||| | || |||||||| Sbjct 6018 ATTCTGTTGATTTGATTTCCGGTTGCATGAATCCTTATACAGCATATAAGGTGTACCAGT 6077 Query 71850 TTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTA 71909 ||| | |||| || || || || ||| | || | ||||||| | | | || Sbjct 6078 TTCTACTTGAGCCTCAATGATTGCGAACCACAAATCTTGTGCCTTTACTTGACGAATATA 6137 Query 71910 TCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTC 71969 || |||| ||| || | ||| | | | || || || || | | ||| Sbjct 6138 CCTTCCTTCTGCTTCATAGCCTTCATAAAGTTTCACAAATTCCTCACCGTACG-ATTCAA 6196 Query 71970 TAA-TCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTT 72028 || || |||| ||| |||||||| ||||||||| | ||| | | || || Sbjct 6197 AAAGACCGGGACTACTATTAGGACACATTAATGACCACATTTCATTGTTTTCAACCCGAC 6256 Query 72029 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGT 72088 ||| || | ||| |||||||| | || ||| | ||||| | ||| || || | Sbjct 6257 GCATGAACAAATCTGGAATCCACAATGCATAAAACATGTCTCTAGCTCTGACTTCTTCTT 6316 Query 72089 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 72148 |||| ||||| || || | ||| || || | | ||||||| |||||| |||||||| | Sbjct 6317 TTCCAGTATTTTTCTTTAAATCCAGAAATTCAAAAATATCACCATGCCAAGGTTCCAAAT 6376 Query 72149 ATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 72208 |||| || | | || || ||||| ||||| || || || | || | ||||| |||| Sbjct 6377 ATATTGCAAACGCGCCTGGACGTTTATTTCCACCTTGGTCAACATAACGTGCGGTATTAT 6436 Query 72209 TATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGC 72268 | || ||||| |||||||||| || ||||| || ||||| || || | ||||| Sbjct 6437 TGTATACTCTTAACATTGGAACAAGGCCATTTGAAATCCCATTTGTACCAGCTATATATG 6496 Query 72269 TTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 72326 |||| | || ||||| | || ||| | ||| ||||| ||||| ||| || Sbjct 6497 TTCCTTTTGCTCGAATGCAATGAACATT--AACACCAATTCCACCTGCTGATTTGCTTAT 6554 Query 72327 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATC 72374 |||||||||| ||||||| |||||||| || ||||| ||| |||||| Sbjct 6555 TAATGCGCATTGTTTTAATGTATCATAAATACCCTCAATAGAATCATC 6602 >seq119 Length=197918 Score = 260 bits (288), Expect = 2e-64 Identities = 574/850 (68%), Gaps = 19/850 (2%) Strand=Plus/Plus Query 41758 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCC 41817 |||||||||||| | ||||| |||||||| || | |||||| || || ||||| || Sbjct 167142 AGACATAACTCCACTCTTTTGATATTCACCAACCTTTCGTTCGAAGAAGTTTGTCTTGCC 167201 Query 41818 TTCCAATGATATATTTTCCATGAAATCA-AACGGATTGGTAACATTATAAAtttttttAA 41876 || | ||| ||| |||||| |||| | || ||||| | |||||| | ||| | || Sbjct 167202 CTCAAGTGAAATAAATTCCAT-AAATGAGAATGGATTTTTGGTATTATAGACTTTATCAA 167260 Query 41877 ATCCCAATTCA-GAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCA 41935 |||||||||| ||| ||| ||| || | |||||||| || |||| | ||| Sbjct 167261 GTCCCAATTCACCCAATAAAT-GATCAGCAACAAATTCTATGTACTGAGTCATTAAATCA 167319 Query 41936 CAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAG 41995 |||||||| || | | ||||||||||| || |||| | |||||| | ||||| Sbjct 167320 CAATTCATGCCCAACATCTTAACTGGAAGTGCGTCAGTTAAAAATTCCTTCTCAATTTTT 167379 Query 41996 ACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAAT---AAATGT 42052 || || ||||| ||||| |||| |||| | | ||||| | | | | |||| Sbjct 167380 ACAGCCTCTGTGATAATTTCAACTACTCTTTCCT---TTGGTGGCTTCTGTTCAAGATGT 167436 Query 42053 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTG 42112 || |||| || ||||| || || | || || || || ||||| ||| | ||| || Sbjct 167437 TTGTACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTT 167496 Query 42113 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT 42172 ||||| || | || ||||||| || | ||| |||| ||||||||||| ||||| Sbjct 167497 GAAAATGTCAACCCTGGCATTAATCCTCTCTTCTTAATCCAAAATATAGCTGCAAAGCTA 167556 Query 42173 CCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA 42232 ||| |||||| || ||||| || || ||||| ||||||| || || ||| | ||| Sbjct 167557 CCACTAAAGAAAATCCCTTCGACAGCTGCAAAAGCAATAACTCGTTCACCAAAGTTTGCA 167616 Query 42233 CT-GTCATG--TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 42289 | | || |||||| ||| |||||| || |||||||| || ||||| || | || Sbjct 167617 TTCTTGCTGGATATCCAATTTAAAGCCCAGTCAGCCTTCTTCTTAACACATGGAAGTGTC 167676 Query 42290 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAA 42349 || || ||||| || | ||| | || |||| ||| ||| || || || || Sbjct 167677 TCAATTGCATTGAATAAGAAGTCACGCTGCTTTGCATCTCTAATATAAGTTTCAATTAAT 167736 Query 42350 AGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTG 42409 | ||||| || || || | ||||| || || || || ||||| ||||| ||| Sbjct 167737 ATTGAGTACATCTCCGAGTGTACATTTTCCATAGCAATTTGGAATCCATAGAAGAATCGA 167796 Query 42410 GCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCG 42469 || || | ||| || ||||| || || || ||| |||||| || || || || || Sbjct 167797 GCTTCTGGAACTTGAACTTCCTGACTGAAACGCTCAATTAAATTCTCATTTACGATGCCA 167856 Query 42470 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT---ATTTTTCGTCCGGTGTT 42526 ||| || ||||| || || |||||||| ||||||| | | ||| | Sbjct 167857 TCAGATGCAGCAAAGAAAGCTAATACATGCGAGATAAAATGACGCTCTGAATCC---TTG 167913 Query 42527 AATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGAT 42586 | || ||||| || | |||||||| |||| ||| ||||| || || ||||| || Sbjct 167914 AGATTGTTCCAGTCTTCCATATCTTTTGATAAATCGACTTCCTCGACTGTCCAGAAGCTG 167973 Query 42587 GCTTCTGCCT 42596 ||||| |||| Sbjct 167974 GCTTCAGCCT 167983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670920870029000