Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq296 116 4e-21 >seq296 Length=113092 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | ||| ||||| | |||||||||||| || || ||||| |||||| Sbjct 112857 CCTCCACGAAGACGAAGAACCAAATGCAATGTAGATTCTTTCTGGATATTGTAGTCGCTC 112916 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | ||||| | |||||| || || |||||| ||| || || || || || Sbjct 112917 AATGTACGACCATCTTCCAATTGTTTTCCTGCGAAGATCAAACGCTGTTGGTCTGGTGGA 112976 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| || ||| |||| | ||| | ||||| | || || ||| Sbjct 112977 ATTCCTTCTTTGTCTTGGATCTTTGCCTTTACATTTTCAATTGTGTCTGATGGCTCAACT 113036 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || || ||||| || || ||||| |||||||| Sbjct 113037 TCTAATGTGATGGTTTTTCCTGTCAAAGTCTTGACGAAAATTTGCAT 113083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506849461878000