Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07]
26,025 sequences; 213,462,749 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq296 131 1e-25
seq442 116 3e-21
seq17255 87.8 1e-12
>seq296
Length=113092
Score = 131 bits (144), Expect = 1e-25
Identities = 157/211 (74%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| ||||| | || || ||||| || || ||||| ||||| | | | | |||||
Sbjct 112874 AACCAAATGCAATGTAGATTCTTTCTGGATATTGTAGTCGCTCAATGTACGACCATCTTC 112933
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
|||||||| || ||| | |||||||| |||||||| ||||||||||||||||||
Sbjct 112934 CAATTGTTTTCCTGCGAAGATCAAACGCTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTG 112993
Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332
|| ||||| ||||||| |||| || || || || || ||||| || |||||||
Sbjct 112994 GATCTTTGC-CTTTACATTTTCAATTGTGTCTGATGGCTCAACTTCTAATGTGATGGTTT 113052
Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
| ||||||| ||| || || |||||||||||
Sbjct 113053 TTCCTGTCAAAGTCTTGACGAAAATTTGCAT 113083
>seq442
Length=86436
Score = 116 bits (128), Expect = 3e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211
|| ||||| ||||| || || |||||||| |||||||| ||||| | | | | |||
Sbjct 25005 AACACTAAGTGAAGTGTTGACTCTTTTTGGATGTTGTAGTCGCTCAATGTACGACCATCT 25064
Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271
||||||||||| ||||| | |||||||| ||||| || |||||||||||| || ||
Sbjct 25065 TCTAATTGTTTTCCAGCAAAGATCAAACGCTGTTGATCTGGTGGAATTCCTTCCTTATCT 25124
Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331
||| || ||| ||| |||| || || || || || || | |||||| ||
Sbjct 25125 TGAATCTTAGCCTTGACATTTTCAATCGTGTCAGATGGCTCGACTTCGAGGGTAATTGTC 25184
Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
||||| |||| ||||| || || || |||||
Sbjct 25185 TTACCCGTCAAGGTTTTGACGAAGATCTGCAT 25216
>seq17255
Length=1118
Score = 87.8 bits (96), Expect = 1e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 15233 ATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATT 15292
|||||||| |||||||| |||||||||||| || || ||||| ||||||| ||
Sbjct 4 ATCAAACGCTGTTGGTCTGGTGGAATTCCTTCCTTATCTTGGATTTTAGCCTTTACATTT 63
Query 15293 TCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15352
|| || ||||| || || || |||||||| |||||||| || | ||||| ||
Sbjct 64 TCAATAGTATCAGATGGCTCAACTTCCAAGGTAATAGTTTTACCAGTTAATGTTTTAACG 123
Query 15353 AAAATTTGCAT 15363
|||||||||||
Sbjct 124 AAAATTTGCAT 134
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362064324114525
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |