Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq296 131 1e-25 seq442 116 3e-21 seq17255 87.8 1e-12 >seq296 Length=113092 Score = 131 bits (144), Expect = 1e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| | || || ||||| || || ||||| ||||| | | | | ||||| Sbjct 112874 AACCAAATGCAATGTAGATTCTTTCTGGATATTGTAGTCGCTCAATGTACGACCATCTTC 112933 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 |||||||| || ||| | |||||||| |||||||| |||||||||||||||||| Sbjct 112934 CAATTGTTTTCCTGCGAAGATCAAACGCTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTG 112993 Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 || ||||| ||||||| |||| || || || || || ||||| || ||||||| Sbjct 112994 GATCTTTGC-CTTTACATTTTCAATTGTGTCTGATGGCTCAACTTCTAATGTGATGGTTT 113052 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | ||||||| ||| || || ||||||||||| Sbjct 113053 TTCCTGTCAAAGTCTTGACGAAAATTTGCAT 113083 >seq442 Length=86436 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || ||||| ||||| || || |||||||| |||||||| ||||| | | | | ||| Sbjct 25005 AACACTAAGTGAAGTGTTGACTCTTTTTGGATGTTGTAGTCGCTCAATGTACGACCATCT 25064 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 ||||||||||| ||||| | |||||||| ||||| || |||||||||||| || || Sbjct 25065 TCTAATTGTTTTCCAGCAAAGATCAAACGCTGTTGATCTGGTGGAATTCCTTCCTTATCT 25124 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||| || ||| ||| |||| || || || || || || | |||||| || Sbjct 25125 TGAATCTTAGCCTTGACATTTTCAATCGTGTCAGATGGCTCGACTTCGAGGGTAATTGTC 25184 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| |||| ||||| || || || ||||| Sbjct 25185 TTACCCGTCAAGGTTTTGACGAAGATCTGCAT 25216 >seq17255 Length=1118 Score = 87.8 bits (96), Expect = 1e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 15233 ATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATT 15292 |||||||| |||||||| |||||||||||| || || ||||| ||||||| || Sbjct 4 ATCAAACGCTGTTGGTCTGGTGGAATTCCTTCCTTATCTTGGATTTTAGCCTTTACATTT 63 Query 15293 TCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15352 || || ||||| || || || |||||||| |||||||| || | ||||| || Sbjct 64 TCAATAGTATCAGATGGCTCAACTTCCAAGGTAATAGTTTTACCAGTTAATGTTTTAACG 123 Query 15353 AAAATTTGCAT 15363 ||||||||||| Sbjct 124 AAAATTTGCAT 134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362064324114525