Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq296 96.9 2e-15 seq442 84.2 1e-11 >seq296 Length=113092 Score = 96.9 bits (106), Expect = 2e-15 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||||||||| || ||||| || |||||||| || ||| | | || ||| Sbjct 112875 ACCAAATGCAATGTAGATTCTTTCTGGATATTGTAGTCGCTCAATGTACGACCATCTTCC 112934 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 ||||| ||||| || || ||||| || ||||| | || || |||||||| || Sbjct 112935 AATTGTTTTCCTGCGAAGATCAAACGCTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGG 112994 Query 33281 ATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 ||| |||| |||| ||| ||| ||||| || | ||| || | || || ||| Sbjct 112995 ATCTTTGCCT---TTACATTTTCAATTGTGTCTGATGGCTCAACTTCTAATGTGATGGTT 113051 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 ||||| || | ||| || ||||||||||||||| Sbjct 113052 TTTCCTGTCAAAGTCTTGACGAAAATTTGCATG 113084 >seq442 Length=86436 Score = 84.2 bits (92), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||||||| || || | ||| ||||||||||| || ||||| || ||| | | Sbjct 25002 CGCAACACTAAGTGAAGTGTTGACTCTTTTTGGATGTTGTAGTCGCTCAATGTACGACCA 25061 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || ||||| |||||| ||| || ||||| || || || | || || ||||| || Sbjct 25062 TCTTCTAATTGTTTTCCAGCAAAGATCAAACGCTGTTGATCTGGTGGAATTCCTTCCTTA 25121 Query 33275 TCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTC-GTTGGGTTGAACGTCCAGAGT 33330 || |||| ||| || || ||| ||||||||| | ||| | | || || || || Sbjct 25122 TCTTGAATCTTAGCC---TTGACATTTTCAATCGTGTCAGATGGCTCG-ACTTCGAGGGT 25177 Query 33331 TATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || ||||| | ||||| ||||| || |||||| Sbjct 25178 AATTGTCTTACCCGTCAAGGTTTTGACGAAGATCTGCATG 25217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318676490220450