Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq296 109 4e-19 seq442 105 5e-18 >seq296 Length=113092 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| | || ||||| || ||||| || ||| | ||| ||| |||| ||| Sbjct 112875 ACCAAATGCAATGTAGATTCTTTCTGGATATTGTAGTCGCTCAATGTACGACCATCTTCC 112934 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 |||||||||||||| || ||||| || || ||||| | || | |||||||| ||| Sbjct 112935 AATTGTTTTCCTGCGAAGATCAAACGCTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGG 112994 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || ||| || || | ||| || |||| ||||| || || | || || ||||| Sbjct 112995 ATCTTTGCCTTTACATTTTCAATTGTGTCTGATGGCTCAACTTCTAATGTGATGGTTTTT 113054 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || |||||||| || || ||||||||| Sbjct 113055 CCTGTCAAAGTCTTGACGAAAATTTGCATG 113084 >seq442 Length=86436 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 ||||| || || || || ||||||||| || || || ||| | ||| ||| |||| Sbjct 25005 AACACTAAGTGAAGTGTTGACTCTTTTTGGATGTTGTAGTCGCTCAATGTACGACCATCT 25064 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 || ||||||||||| ||||| ||||| || || || || | || | ||||| |||||| Sbjct 25065 TCTAATTGTTTTCCAGCAAAGATCAAACGCTGTTGATCTGGTGGAATTCCTTCCTTATCT 25124 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||| || ||||| | ||| || || | ||||| || |||| |||||||| Sbjct 25125 TGAATCTTAGCCTTGACATTTTCAATCGTGTCAGATGGCTCGACTTCGAGGGTAATTGTC 25184 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||||| || || || || || || || |||||| Sbjct 25185 TTACCCGTCAAGGTTTTGACGAAGATCTGCATG 25217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354665071751700