Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq119 255 5e-63 >seq119 Length=197918 Score = 255 bits (282), Expect = 5e-63 Identities = 553/818 (68%), Gaps = 12/818 (1%) Strand=Plus/Plus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 ||||||||||| | ||| || ||| || |||||||| || || || | |||||| | Sbjct 167158 TTTTGATATTCACCAACCTTTCGTTCGAAGAAGTTTGTCTTGCCCTCAAGTGAAATAAAT 167217 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAAC 12979 |||||||| ||| |||||||| | | |||| ||| | | || ||||| || Sbjct 167218 TCCATAAATGAGAATGGATTTTTGGTATTATAGACTTTATCAAGTCCCAATTCACCCAAT 167277 Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 || ||||||||||| ||||||||||| ||||||||||||| ||||| || | | Sbjct 167278 AAATGATCAGCAACAAATTCTATGTACTGAGTCATTAAATCACAATTCATGCCCAACATC 167337 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATG 13099 || || || | || || |||||||| | || || || | || || || | | || Sbjct 167338 TTAACTGGAAGTGCGTCAGTTAAAAATTCCTTCTCAATTTTTACAGCCTCTGTGATAATT 167397 Query 13100 TCTCTTATTACGTTCTCTAATGGAGGATT-TGAT--AGATGCTTAAACATCATACATGCA 13156 || || | | ||| | ||| || || || | ||||| || |||| | |||||| Sbjct 167398 TCAACTACT-CTTTCCTT--TGGTGGCTTCTGTTCAAGATGTTTGTACATTAAGCATGCA 167454 Query 13157 AAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGC 13216 || |||| || | |||||| ||||| || || || ||||||||||| | || ||| Sbjct 167455 AAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAAAATGTCAACCCTGGC 167514 Query 13217 ATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCT 13276 || | |||| || ||||||||||||||||| ||||| ||| ||| || || ||| Sbjct 167515 ATTAATCCTCTCTTCTTAATCCAAAATATAGCTGCAAAGCTACCACTAAAGAAAATCCCT 167574 Query 13277 TCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCAC 13336 || || |||||||| || || | | ||||||| | | ||| || || |||||| Sbjct 167575 TCGACAGCTGCAAAAGCAATAACTCGTTCACCAAAGTTTGCATTCTTGCTGGATATCCAA 167634 Query 13337 TTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAA 13396 ||| ||||||| || || | ||||| || | | || ||||| || ||||| Sbjct 167635 TTTAAAGCCCAGTCAGCCTTCTTCTTAACACATGGAAGTGTCTCAATTGCATTGAATAAG 167694 Query 13397 TAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAA 13456 | | | ||| ||| ||||||||| || || |||| ||||| || || Sbjct 167695 AAGTCACGCTGCTTTGCATCTCTAATATAAGTTTCAATTAATATTGAGTACATCTCCGAG 167754 Query 13457 TGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACT 13516 || | ||||||||| || |||||||| ||||| || ||| ||| |||| || |||||| Sbjct 167755 TGTACATTTTCCATAGCAATTTGGAATCCATAGAAGAATCGAGCTTCTGGAACTTGAACT 167814 Query 13517 T-CGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaa 13575 | | || | ||| | || ||| || || || || || || ||| |||||||| || Sbjct 167815 TCCTGACTGAAA-CGCTCAATTAAATTCTCATTTACGATGCCATCAGATGCAGCAAAGAA 167873 Query 13576 aGCAAGTATGTGCTTAATAAAttttttttCGTTTTC--TGACAACTTTAACCAATCTGGA 13633 ||| | || ||| ||||| | || || ||| | || ||| ||| Sbjct 167874 AGCTAATACATGCGAGATAAAATGACGCTCTGAATCCTTGAGA--TTGTTCCAGTCTTCC 167931 Query 13634 AAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAA 13671 | ||||||||||||||| || ||||| || ||||| || Sbjct 167932 ATATCTTTTGATAAATCGACTTCCTCGACTGTCCAGAA 167969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430845701137050