Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07]
26,025 sequences; 213,462,749 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq119 255 5e-63
>seq119
Length=197918
Score = 255 bits (282), Expect = 5e-63
Identities = 553/818 (68%), Gaps = 12/818 (1%)
Strand=Plus/Plus
Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919
||||||||||| | ||| || ||| || |||||||| || || || | |||||| |
Sbjct 167158 TTTTGATATTCACCAACCTTTCGTTCGAAGAAGTTTGTCTTGCCCTCAAGTGAAATAAAT 167217
Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAAC 12979
|||||||| ||| |||||||| | | |||| ||| | | || ||||| ||
Sbjct 167218 TCCATAAATGAGAATGGATTTTTGGTATTATAGACTTTATCAAGTCCCAATTCACCCAAT 167277
Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039
|| ||||||||||| ||||||||||| ||||||||||||| ||||| || | |
Sbjct 167278 AAATGATCAGCAACAAATTCTATGTACTGAGTCATTAAATCACAATTCATGCCCAACATC 167337
Query 13040 TTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATG 13099
|| || || | || || |||||||| | || || || | || || || | | ||
Sbjct 167338 TTAACTGGAAGTGCGTCAGTTAAAAATTCCTTCTCAATTTTTACAGCCTCTGTGATAATT 167397
Query 13100 TCTCTTATTACGTTCTCTAATGGAGGATT-TGAT--AGATGCTTAAACATCATACATGCA 13156
|| || | | ||| | ||| || || || | ||||| || |||| | ||||||
Sbjct 167398 TCAACTACT-CTTTCCTT--TGGTGGCTTCTGTTCAAGATGTTTGTACATTAAGCATGCA 167454
Query 13157 AAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGC 13216
|| |||| || | |||||| ||||| || || || ||||||||||| | || |||
Sbjct 167455 AAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAAAATGTCAACCCTGGC 167514
Query 13217 ATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCT 13276
|| | |||| || ||||||||||||||||| ||||| ||| ||| || || |||
Sbjct 167515 ATTAATCCTCTCTTCTTAATCCAAAATATAGCTGCAAAGCTACCACTAAAGAAAATCCCT 167574
Query 13277 TCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCAC 13336
|| || |||||||| || || | | ||||||| | | ||| || || ||||||
Sbjct 167575 TCGACAGCTGCAAAAGCAATAACTCGTTCACCAAAGTTTGCATTCTTGCTGGATATCCAA 167634
Query 13337 TTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAA 13396
||| ||||||| || || | ||||| || | | || ||||| || |||||
Sbjct 167635 TTTAAAGCCCAGTCAGCCTTCTTCTTAACACATGGAAGTGTCTCAATTGCATTGAATAAG 167694
Query 13397 TAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAA 13456
| | | ||| ||| ||||||||| || || |||| ||||| || ||
Sbjct 167695 AAGTCACGCTGCTTTGCATCTCTAATATAAGTTTCAATTAATATTGAGTACATCTCCGAG 167754
Query 13457 TGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACT 13516
|| | ||||||||| || |||||||| ||||| || ||| ||| |||| || ||||||
Sbjct 167755 TGTACATTTTCCATAGCAATTTGGAATCCATAGAAGAATCGAGCTTCTGGAACTTGAACT 167814
Query 13517 T-CGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaa 13575
| | || | ||| | || ||| || || || || || || ||| |||||||| ||
Sbjct 167815 TCCTGACTGAAA-CGCTCAATTAAATTCTCATTTACGATGCCATCAGATGCAGCAAAGAA 167873
Query 13576 aGCAAGTATGTGCTTAATAAAttttttttCGTTTTC--TGACAACTTTAACCAATCTGGA 13633
||| | || ||| ||||| | || || ||| | || ||| |||
Sbjct 167874 AGCTAATACATGCGAGATAAAATGACGCTCTGAATCCTTGAGA--TTGTTCCAGTCTTCC 167931
Query 13634 AAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAA 13671
| ||||||||||||||| || ||||| || ||||| ||
Sbjct 167932 ATATCTTTTGATAAATCGACTTCCTCGACTGTCCAGAA 167969
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430845701137050
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |