Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07]
26,025 sequences; 213,462,749 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq442 134 3e-26
seq296 129 1e-24
seq726 102 2e-16
seq17255 91.5 3e-13
>seq442
Length=86436
Score = 134 bits (148), Expect = 3e-26
Identities = 155/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|||| || | ||| || ||||| || || || ||||| | || | ||| ||||||
Sbjct 25008 ACTAAGTGAAGTGTTGACTCTTTTTGGATGTTGTAGTCGCTCAATGTACGACCATCTTCT 25067
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
| ||||||||||||||| || | | ||||||||| || || |||||||| ||||| |||
Sbjct 25068 AATTGTTTTCCAGCAAAGATCAAACGCTGTTGATCTGGTGGAATTCCTTCCTTATCTTGA 25127
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
||||| || || |||||||| | || || || || || || || ||||| ||||||
Sbjct 25128 ATCTTAGCCTTGACATTTTCAATCGTGTCAGATGGCTCGACTTCGAGGGTAATTGTCTTA 25187
Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || | ||||| || || ||||||||
Sbjct 25188 CCCGTCAAGGTTTTGACGAAGATCTGCAT 25216
>seq296
Length=113092
Score = 129 bits (142), Expect = 1e-24
Identities = 166/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390
|||| || | || | ||| || | ||| ||||||||||||||||| ||||| |||||
Sbjct 112855 TTCCTCCACGAAGACGAAGAACCAAATGCAATGTAGATTCTTTCTGGATATTGTAGTCGC 112914
Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450
| || | ||| ||||| | ||||||||| || || || | | |||||| || || |
Sbjct 112915 TCAATGTACGACCATCTTCCAATTGTTTTCCTGCGAAGATCAAACGCTGTTGGTCTGGTG 112974
Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTA 104510
| ||||||||||| || || |||||||| ||||||||||| | || || || || |
Sbjct 112975 GAATTCCTTCTTTGTCTTGGATCTTTGCCTTTACATTTTCAATTGTGTCTGATGGCTCAA 113034
Query 104511 CCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
| |||| ||| || || || || || | || || || || || |||||
Sbjct 113035 CTTCTAATGTGATGGTTTTTCCTGTCAAAGTCTTGACGAAAATTTGCAT 113083
>seq726
Length=60972
Score = 102 bits (112), Expect = 2e-16
Identities = 236/344 (69%), Gaps = 14/344 (4%)
Strand=Plus/Minus
Query 238442 TGATAATTTTTGCTATTATAATAAAAGATATGAT--TCTATA--GAATCCACACATTCAT 238497
|||||||||||| | |||||||||| || || |||| | |||| ||| |||
Sbjct 19639 TGATAATTTTTGTTTTTATAATAAAGATTACGACAATCTAAAAGGAATT-ACAGATT--- 19584
Query 238498 GGGC-ACGAGAAACATTAGAAGCACAC-GTAAATGATAGAAGAAAATATATTTACTCTTT 238555
|||| | || |||||||| | | ||| ||||| || | | | | ||| | || |
Sbjct 19583 GGGCTATGA-AAACATTAAATGATCACCGTAAA-GACAAACGTGATTATGTGTATACACG 19526
Query 238556 AAAACAGCTCGAGAGAGCCGAAA-CTCACGATCCCCTATGGAATTCCGCCCAGATACAAA 238614
||| | | || |||| | ||| |||||||| |||||||| ||| || || ||||
Sbjct 19525 CAAAGAATTTGA-AGAGGCAAAAACTCACGATGATTTATGGAATAGCGCACAAATTCAAA 19467
Query 238615 TGGTAAGACTAGGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTG 238674
|| || | ||| ||||||||| | || || ||||||||||||||||||||||| | |
Sbjct 19466 TGACAAAAGAAGGTAAAATGCATGGATTTTTGCGAATGTATTGGGCTAAAAAGATTTTAG 19407
Query 238675 AATGGACTAGATCTCCAAAGGAAGCTCTTAGATATAGTATTTATCTGAACGATAAATACG 238734
||||||| | | ||| | || | |||| | | || ||| | || ||| |
Sbjct 19406 AATGGACAGCAACGCCAGAAGATGGTCTTGAAACTGCAATCTATTTAAATGATCGCTTTA 19347
Query 238735 AACTCGACGGTACGGATCCTAACGGATACGTAGGTTGTATGTGG 238778
| || || |||| ||||| ||||| || || || || ||||||
Sbjct 19346 ATCTTGATGGTAGAGATCCGAACGGCTATGTGGGCTGCATGTGG 19303
Score = 95.1 bits (104), Expect = 3e-14
Identities = 118/159 (74%), Gaps = 2/159 (1%)
Strand=Plus/Minus
Query 237966 CCAGATAAAGTGGTATTTATACAAGTTGACGCTCACAATATTGTACCTTGTTGGGAAGCA 238025
|||| |||||| ||||||||||||||| ||||| || |||||||| ||| |||
Sbjct 20136 CCAGCAAAAGTGCCATTTATACAAGTTGATGCTCATAACATTGTACCAATATGGATAGCT 20077
Query 238026 TCTCATAAACAAGAATACGGTGCTAGAACATTACGTAAGAAAATAAATGGTATG-TTAGA 238084
||| |||| || ||||| | ||| | ||| | ||||| ||||| ||| | | | || ||
Sbjct 20076 TCTGATAAGCAGGAATATGCAGCTCGTACAATCCGTAATAAAATTAATAGCAAGCTTGGA 20017
Query 238085 TACATATCTTACAGAATTTCCTGTAATAACTAAACATCC 238123
| |||| | ||||||||||| | | | |||||||||
Sbjct 20016 GA-ATATTTAACAGAATTTCCACCAGTCATTAAACATCC 19979
>seq17255
Length=1118
Score = 91.5 bits (100), Expect = 3e-13
Identities = 97/128 (76%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496
|||||| || || || |||||||| ||||| || || || || ||||||||||| | ||
Sbjct 12 CTGTTGGTCTGGTGGAATTCCTTCCTTATCTTGGATTTTAGCCTTTACATTTTCAATAGT 71
Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556
||| || || || || | |||||||| |||||||| | |||||| || || || ||
Sbjct 72 ATCAGATGGCTCAACTTCCAAGGTAATAGTTTTACCAGTTAATGTTTTAACGAAAATTTG 131
Query 104557 CATTTTGT 104564
|||| |||
Sbjct 132 CATTCTGT 139
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151014471600700
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |