Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq442 134 3e-26 seq296 129 1e-24 seq726 102 2e-16 seq17255 91.5 3e-13 >seq442 Length=86436 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||| || | ||| || ||||| || || || ||||| | || | ||| |||||| Sbjct 25008 ACTAAGTGAAGTGTTGACTCTTTTTGGATGTTGTAGTCGCTCAATGTACGACCATCTTCT 25067 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | ||||||||||||||| || | | ||||||||| || || |||||||| ||||| ||| Sbjct 25068 AATTGTTTTCCAGCAAAGATCAAACGCTGTTGATCTGGTGGAATTCCTTCCTTATCTTGA 25127 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || || |||||||| | || || || || || || || ||||| |||||| Sbjct 25128 ATCTTAGCCTTGACATTTTCAATCGTGTCAGATGGCTCGACTTCGAGGGTAATTGTCTTA 25187 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||||| || || |||||||| Sbjct 25188 CCCGTCAAGGTTTTGACGAAGATCTGCAT 25216 >seq296 Length=113092 Score = 129 bits (142), Expect = 1e-24 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || | || | ||| || | ||| ||||||||||||||||| ||||| ||||| Sbjct 112855 TTCCTCCACGAAGACGAAGAACCAAATGCAATGTAGATTCTTTCTGGATATTGTAGTCGC 112914 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 | || | ||| ||||| | ||||||||| || || || | | |||||| || || | Sbjct 112915 TCAATGTACGACCATCTTCCAATTGTTTTCCTGCGAAGATCAAACGCTGTTGGTCTGGTG 112974 Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTA 104510 | ||||||||||| || || |||||||| ||||||||||| | || || || || | Sbjct 112975 GAATTCCTTCTTTGTCTTGGATCTTTGCCTTTACATTTTCAATTGTGTCTGATGGCTCAA 113034 Query 104511 CCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | |||| ||| || || || || || | || || || || || ||||| Sbjct 113035 CTTCTAATGTGATGGTTTTTCCTGTCAAAGTCTTGACGAAAATTTGCAT 113083 >seq726 Length=60972 Score = 102 bits (112), Expect = 2e-16 Identities = 236/344 (69%), Gaps = 14/344 (4%) Strand=Plus/Minus Query 238442 TGATAATTTTTGCTATTATAATAAAAGATATGAT--TCTATA--GAATCCACACATTCAT 238497 |||||||||||| | |||||||||| || || |||| | |||| ||| ||| Sbjct 19639 TGATAATTTTTGTTTTTATAATAAAGATTACGACAATCTAAAAGGAATT-ACAGATT--- 19584 Query 238498 GGGC-ACGAGAAACATTAGAAGCACAC-GTAAATGATAGAAGAAAATATATTTACTCTTT 238555 |||| | || |||||||| | | ||| ||||| || | | | | ||| | || | Sbjct 19583 GGGCTATGA-AAACATTAAATGATCACCGTAAA-GACAAACGTGATTATGTGTATACACG 19526 Query 238556 AAAACAGCTCGAGAGAGCCGAAA-CTCACGATCCCCTATGGAATTCCGCCCAGATACAAA 238614 ||| | | || |||| | ||| |||||||| |||||||| ||| || || |||| Sbjct 19525 CAAAGAATTTGA-AGAGGCAAAAACTCACGATGATTTATGGAATAGCGCACAAATTCAAA 19467 Query 238615 TGGTAAGACTAGGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTG 238674 || || | ||| ||||||||| | || || ||||||||||||||||||||||| | | Sbjct 19466 TGACAAAAGAAGGTAAAATGCATGGATTTTTGCGAATGTATTGGGCTAAAAAGATTTTAG 19407 Query 238675 AATGGACTAGATCTCCAAAGGAAGCTCTTAGATATAGTATTTATCTGAACGATAAATACG 238734 ||||||| | | ||| | || | |||| | | || ||| | || ||| | Sbjct 19406 AATGGACAGCAACGCCAGAAGATGGTCTTGAAACTGCAATCTATTTAAATGATCGCTTTA 19347 Query 238735 AACTCGACGGTACGGATCCTAACGGATACGTAGGTTGTATGTGG 238778 | || || |||| ||||| ||||| || || || || |||||| Sbjct 19346 ATCTTGATGGTAGAGATCCGAACGGCTATGTGGGCTGCATGTGG 19303 Score = 95.1 bits (104), Expect = 3e-14 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 237966 CCAGATAAAGTGGTATTTATACAAGTTGACGCTCACAATATTGTACCTTGTTGGGAAGCA 238025 |||| |||||| ||||||||||||||| ||||| || |||||||| ||| ||| Sbjct 20136 CCAGCAAAAGTGCCATTTATACAAGTTGATGCTCATAACATTGTACCAATATGGATAGCT 20077 Query 238026 TCTCATAAACAAGAATACGGTGCTAGAACATTACGTAAGAAAATAAATGGTATG-TTAGA 238084 ||| |||| || ||||| | ||| | ||| | ||||| ||||| ||| | | | || || Sbjct 20076 TCTGATAAGCAGGAATATGCAGCTCGTACAATCCGTAATAAAATTAATAGCAAGCTTGGA 20017 Query 238085 TACATATCTTACAGAATTTCCTGTAATAACTAAACATCC 238123 | |||| | ||||||||||| | | | ||||||||| Sbjct 20016 GA-ATATTTAACAGAATTTCCACCAGTCATTAAACATCC 19979 >seq17255 Length=1118 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 |||||| || || || |||||||| ||||| || || || || ||||||||||| | || Sbjct 12 CTGTTGGTCTGGTGGAATTCCTTCCTTATCTTGGATTTTAGCCTTTACATTTTCAATAGT 71 Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 ||| || || || || | |||||||| |||||||| | |||||| || || || || Sbjct 72 ATCAGATGGCTCAACTTCCAAGGTAATAGTTTTACCAGTTAATGTTTTAACGAAAATTTG 131 Query 104557 CATTTTGT 104564 |||| ||| Sbjct 132 CATTCTGT 139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151014471600700