Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq767 185 1e-41 seq10553 127 2e-24 >seq767 Length=55330 Score = 185 bits (204), Expect = 1e-41 Identities = 398/583 (68%), Gaps = 38/583 (7%) Strand=Plus/Minus Query 6841 TAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTTTCATATCAACAGCTTGA 6900 |||||||||||||| || | ||||||| ||| ||||| || |||| || | | ||| Sbjct 37963 TAAATATGAGCATCGCCAAAAGTATGAACAAAATCACCAGGCTTCAAATTTGTAACATGA 37904 Query 6901 GCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATA 6960 ||||| | || || ||||| ||||| || || | ||| ||||| || || | |||||| Sbjct 37903 GCAATCATGTACGTCAATAAGGCATACGATGCAATATTGAAAGGAACTCCAAGACCCATA 37844 Query 6961 TCTGCTGATCTTTGATAACATTGACAAGATAAAAT----ATTGTCTATAGCATAAAATTG 7016 || ||||||||||| || |||| | || | || | ||| | | |||||||||| Sbjct 37843 TCAGCTGATCTTTGGTATAATTGGC-AGCTCAATTCACCATTAGCGA---CATAAAATTG 37788 Query 7017 ACACAATACA-TGACATGGAGGTAAAACAGCC---TGATCTATATCAGATGGATTCCAAG 7072 | || | ||| |||||||| || || ||| || || || ||||||||| | Sbjct 37787 A-ACGAGACAGTGACATGGTGG---AAGTGCCATTTGTGGAATGTCCACTGGATTCCATG 37732 Query 7073 CAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTT--ATAATTATTTG 7130 | ||| || |||||| | |||||||||||| | ||| | | ||| || | | Sbjct 37731 CGCTCAATATAATACGACGATCATTTGGATTGGCTTTGA--TGCGTTCAATGACATCCTT 37674 Query 7131 TAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAA 7190 |||||| || || || || |||||||| | | || || || |||| || || ||||| Sbjct 37673 TAATTGGTCAATTCCTTGGCCTTCATATTCATCATCGCATGTTTTATATTTGGCACCAAA 37614 Query 7191 ATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGATGATTAAATCC 7250 ||||| ||| ||||| ||||||| ||||| |||||||| ||| ||||| || ||| || Sbjct 37613 ATGTCGCCACTGAAATCCATAAACTGGACCCAAATCACCAACTTGACGATCATGAAAACC 37554 Query 7251 TAATCGATTTA--AATT---AGATTTTGATCCATAAGCATCCCAAATATGTACAGAtttt 7305 || || | |||| | || | | | |||||||| | | | ||| | Sbjct 37553 GGATGCATCAAGGAATTCACGCGTACTGTTTC-----CGTCCCAAATTTTT--ATATTCT 37501 Query 7306 t----ttGATAAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATAAAAGTTCTTCTAC 7361 | | | ||||| || || ||| |||||||| | |||||||| ||| ||||| | Sbjct 37500 TCGCCTGTAGCAATTT--AGCATCTGTGGATCCTTTTACGAACCATAGAAGCTCTTCAGC 37443 Query 7362 TATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAAGGGAAT 7404 | ||| |||||||| | || ||| || || | || || ||| Sbjct 37442 AACTCCTCGCCAAAATACTCGTTTGGTTGTAAGCAATGGAAAT 37400 >seq10553 Length=1873 Score = 127 bits (140), Expect = 2e-24 Identities = 294/441 (67%), Gaps = 18/441 (4%) Strand=Plus/Minus Query 164551 GGTAAAACATTAATGGCTCGATGCATTGCTCAAGCTTTTAAATC---GCGACCCGTTAAA 164607 |||||||| || ||||| ||| |||| | | | | || ||| | || ||| ||| Sbjct 1473 GGTAAAACGTTGATGGCACGACAGATTGGT-ACGATGTTGAATGCAAGAGAACCG--AAA 1417 Query 164608 ATTGTTAATGGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGA 164667 ||||| || ||||| || | ||| |||| ||||| |||||| ||||| ||| | | Sbjct 1416 ATTGTAAACGGTCCACAAATTTTGGACAAGTATGTTGGTGAGAGTGAAGCAAATATCCGT 1357 Query 164668 AAGTTGTTTCAGGAGGCTGAAGAAGAACAAAAGAAAGCAGGTTTAGCTAGTAAATTACAT 164727 | | ||| ||| || ||||||||| |||||| | |||| | ||| | || Sbjct 1356 AGACTTTTTGCGGATGCAGAAGAAGAAGAAAAGAGATTAGGTCCAAATAGCGGTCTCCAC 1297 Query 164728 GTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGTGATA-------ATAT 164780 |||| | || ||||| || |||||| |||| ||| || ||| | | || Sbjct 1296 ATTATCATATTCGATGAAATCGATGCTATTTGTAAATCTCGAGGTTCTGTGGCTGGAAAT 1237 Query 164781 TATT-----CATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCC 164835 | | |||||| | || || ||||| || | |||| || || ||||| ||| Sbjct 1236 TCTGGCGTCCATGATACGGTTGTGAATCAATTATTGGCTAAGATCGACGGTGTTGAACAA 1177 Query 164836 TTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTA 164895 |||||||| ||||| | | |||||||| || |||| ||| | ||||| || ||||| Sbjct 1176 TTAAATAACATTTTGGTCATCGGTATGACAAATCGACGTGACATGATTGACGAAGCTTTG 1117 Query 164896 TTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGC 164955 | ||||||||| |||| ||| | | || ||||| || || || | || ||| | Sbjct 1116 ATGCGACCTGGTAGATTGGAAGTTCAGATGGAAATTGGCTTGCCTAATGAACCTGGAAGA 1057 Query 164956 CTTCAAATTTTAAAAGTTCAT 164976 | ||||||||||| ||||| Sbjct 1056 GTACAAATTTTAAATATTCAT 1036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595678155390000