Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq231 132 3e-26 >seq231 Length=131800 Score = 132 bits (146), Expect = 3e-26 Identities = 350/529 (66%), Gaps = 9/529 (2%) Strand=Plus/Plus Query 3618 ATGAATTGATATATTTTGCTGACGTATGCGCTGGTCCAGGTGGTTTCAGTGAATATATGT 3677 |||| ||| | ||||||||||| || || |||||||| ||||| || |||||||| || Sbjct 58175 ATGACTTGCTGTATTTTGCTGATGTCTGTGCTGGTCCCGGTGGATTTAGTGAATAC--GT 58232 Query 3678 TATGGA--GAAAGAAATGGAATATCAAAGGTTATGGTATGACGTTACGCGaaaaaaaTGA 3735 | || | | ||||||||| | ||||| | ||| | || ||| | ||||||| Sbjct 58233 TTTGAACCGTAAGAAATGGGAAGCTAAAGGATTTGGATTTACATTAAAAGCTGAAAATGA 58292 Query 3736 TTTTCAACTGAACAGATTTTACGATAACTTTTCGGAAACTTTACAC-CCGTATTATGGTC 3794 || |||| || || | | | | ||||| || ||| || | |||||| Sbjct 58293 CTTCAAACTTCACGACTTCTTTGCTGGACCGCCAGAAACATT-CACACCATTTTATGGAA 58351 Query 3795 CGCTTAACGATGGTAATATCTACAATTCACAAAATCAGAAAGGTTTTTGTGAAATGATTA 3854 | | ||||| ||| ||||| | | |||||| || |||| || |||| | Sbjct 58352 TTAATGAGGATGGAAATGTCTACGACCCGAAAAATCTCAAGTCTTTTGAGGATCTGATCA 58411 Query 3855 TGAAAGATACCGAAGGAAAAGGTGTACATTTTATGATGGCTGACGGTGGGTTCTCGGTTG 3914 || | | || |||| || || ||||||||||||||||| || || ||||| |||| Sbjct 58412 TGGATCAAAC---AGGATCTGGAGTGCATTTTATGATGGCTGATGGCGGATTCTCAGTTG 58468 Query 3915 AGGGTCAAGAAAATATGCAAGAAATGTTATCGAAAAAGATGTATTTGTGTCAATGTTTAA 3974 |||| ||||||||||| |||||||| || || || || ||||| | || ||| | Sbjct 58469 AGGGACAAGAAAATATTCAAGAAATTTTGTCAAAGCAGCTGTATCTTGCACAGTGTCTCT 58528 Query 3975 TTGCATTGATGATCATACGAATTGGTGGTCATTGTGTTATCAAATTTTTCGATATATTTA 4034 |||||| || | | | | ||| |||| ||| | ||| | |||||| | || | Sbjct 58529 GCGCATTGTCAATTGTGAGGACTAATGGACATTTTGTGGTTAAACTATTCGATCTTTTCA 58588 Query 4035 CACCTTTTAGTGCTGGTTTAGTGTATTTGATGTATAGATCTTTTAATCGTATTTGTATTT 4094 |||| || || | ||| | ||||| ||||| | || || | || | || | Sbjct 58589 CACCATTCAGCGTCTCATTAATTTATTTAATGTACAAATGCTTCACAAAGATCAGCATAT 58648 Query 4095 TCAAACCACATTCATCGCGACCGGCCAATTCTGAAAGATATTTGGTGTG 4143 ||| || || || ||||| || ||||| ||||||||||| || || Sbjct 58649 GCAAGCCCAATACAAGTCGACCTGCTAATTCCGAAAGATATTTAGTTTG 58697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276465882815575